Escherichia coli O157:H7 F1273 |
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Putative Escherichia coli O157:H7 F1273 RM systems
Ref: Bono,J.L. unpublished
REBASE ref # 30303
| Sequence length: | GenBank #: | |
| Chromosome: | 5,523,389 bp | CP038376 |
| plasmid pF1273-1: | 93,180 bp | CP038379 |
| plasmid pF1273-3: | 99,810 bp | CP038378 |
REBASE acronym: EcoF1273
Org_num: 40024
All begin E3159_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3250 | endoribonuclease SymE | |||
| 3255 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoF1273ORF3260P |
| 3260 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoF1273ORF3260P |
| 3265 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoF1273ORF3260P |
| 3270 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1670 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.EcoF1273ORF1675P | |
| 1685 | Eae protein | |||
| 2885 | DUF4102 domain-containing protein | |||
| 2890 | C | C.EcoZ1836ORF24740P (100% identity) | CTAAGNNNNNCTTAG | C.EcoF1273ORF2900P |
| 2895 | R | EcoZ1836ORF24740P (100% identity) | RGGNCCY | EcoF1273ORF2900P |
| 2900 | M | M.EcoZ1836ORF24740P (100% identity) | RGGNCCY | M.EcoF1273ORF2900P |
| 2905 | 87 aa hypothetical protein | |||
| 2980 | transposase | |||
| 2985 | R | Ecos1613ORF26795P (100% identity) | EcoF1273ORF2985P | |
| 2990 | N-acetylneuraminate epimerase | |||
| 3020 | DEAD/DEAH box helicase | |||
| 3025 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoF1273ORF3025P |
| 4960 | PerC family transcriptional regulator | |||
| 4965 | M | M.EcoZ1836ORF22690P (100% identity) | GATC | M.EcoF1273ORF4965P |
| 4970 | LexA family transcriptional regulator | |||
| 12550 | TrmB family transcriptional regulator | |||
| 12555 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoF1273ORF12555P | |
| 12570 | 61 aa hypothetical protein | |||
| 12955 | TrmB family transcriptional regulator | |||
| 12960 | M | M.EcoZ1836ORF13250P (100% identity) | M.EcoF1273ORF12960P | |
| 12965 | DUF1737 domain-containing protein | |||
| 17255 | drug/metabolite exporter YedA | |||
| 17260 | V | V.EcosPA8DcmP (100% identity) | V.EcoF1273DcmP | |
| 17265 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoF1273DcmP |
| 17270 | phosphohydrolase | |||
| 18150 | NinE family protein | |||
| 18155 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoF1273ORF18155P |
| 18160 | recombination protein NinB | |||
| 25445 | DNA-binding transcriptional regulator Fis | |||
| 25450 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoF1273ORF25450P |
| 25455 | DUF2556 domain-containing protein | |||
| 25975 | ribulose-phosphate 3-epimerase | |||
| 25980 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoF1273DamP |
| 25985 | cell division protein DamX | |||
| plasmid pF1273-1 | ||||
| 29240 | 101 aa hypothetical protein | |||
| 29245 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoF1273ORF29245P | |
| 29250 | 73 aa hypothetical protein | |||
| plasmid pF1273-3 | ||||
| 28925 | 143 aa hypothetical protein | |||
| 28945 | M | M.EcoMBT5ORF29545P (100% identity) | M.EcoF1273ORF28945P | |
| 28950 | recombination-associated protein RdgC | |||