Escherichia coli O157:H7 YB14-1 |
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Putative Escherichia coli O157:H7 YB14-1 RM systems
Ref: Bono,J.L. unpublished
REBASE ref # 30303
| Sequence length: | GenBank #: | |
| Chromosome: | 5,546,361 bp | CP038284 |
| plasmid pYB14-1: | 100,480 bp | CP038286 |
REBASE acronym: EcoYB141
Org_num: 40049
All begin E4U79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24835 | DUF262 domain-containing protein | |||
| 24840 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoYB141ORF24845P |
| 24845 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoYB141ORF24845P |
| 24850 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoYB141ORF24845P |
| 24855 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2340 | cell division protein DamX | |||
| 2345 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoYB141DamP |
| 2350 | ribulose-phosphate 3-epimerase | |||
| 2865 | DUF2556 domain-containing protein | |||
| 2870 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoYB141ORF2870P |
| 2875 | DNA-binding transcriptional regulator Fis | |||
| 9880 | recombination protein NinB | |||
| 9885 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoYB141ORF9885P |
| 9890 | NinE family protein | |||
| 10780 | phosphohydrolase | |||
| 10785 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoYB141DcmP |
| 10790 | V | V.EcosPA8DcmP (100% identity) | V.EcoYB141DcmP | |
| 10795 | drug/metabolite exporter YedA | |||
| 13465 | TrmB family transcriptional regulator | |||
| 13470 | M | M.EcoZ1836ORF13250P (100% identity) | M.EcoYB141ORF13470P | |
| 13475 | DUF1737 domain-containing protein | |||
| 15465 | DUF1737 domain-containing protein | |||
| 15470 | M | M.EcoSJ7ORF10725P (100% identity) | M.EcoYB141ORF15470P | |
| 15475 | TrmB family transcriptional regulator | |||
| 15775 | 61 aa hypothetical protein | |||
| 15790 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoYB141ORF15790P | |
| 15795 | TrmB family transcriptional regulator | |||
| 23135 | LexA family transcriptional regulator | |||
| 23140 | M | M.EcoZ1836ORF22690P (100% identity) | GATC | M.EcoYB141ORF23140P |
| 23145 | PerC family transcriptional regulator | |||
| 25080 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoYB141ORF25080P |
| 25085 | DEAD/DEAH box helicase | |||
| 25115 | N-acetylneuraminate epimerase | |||
| 25120 | R | Ecos1613ORF26795P (100% identity) | EcoYB141ORF25120P | |
| 25125 | transposase | |||
| 25200 | 87 aa hypothetical protein | |||
| 25205 | M | M.EcoZ1836ORF24740P (100% identity) | RGGNCCY | M.EcoYB141ORF25205P |
| 25210 | R | EcoZ1836ORF24740P (100% identity) | RGGNCCY | EcoYB141ORF25205P |
| 25215 | C | C.EcoZ1836ORF24740P (100% identity) | CTAAGNNNNNCTTAG | C.EcoYB141ORF25205P |
| 25220 | DUF4102 domain-containing protein | |||
| plasmid pYB14-1 | ||||
| 28815 | 101 aa hypothetical protein | |||
| 28820 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoYB141ORF28820P | |
| 28825 | 73 aa hypothetical protein | |||