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Putative Helicobacter pylori A45 RM systems
Ref: Butenko,I. et al. unpublished
REBASE ref # 30451
Complete sequence: 1,662,737 bp
GenBank #: CP053256
REBASE acronym: HpyA45
Org_num: 40401
All begin C528_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
380 | LPP20 family lipoprotein | |||
385 | S | S.HpyHPYORF385P (100% identity) | S.HpyA45ORF390P | |
390 | M | M.HpyHPYORF385P (99% identity) | M.HpyA45ORF390P | |
395 | integrase | |||
565 | relaxase/mobilization nuclease domain-containing | |||
570 | M | M.HpyHPYORF570P (100% identity) | M.HpyA45ORF570P | |
575 | R | HpyHPYORF570P (100% identity) | HpyA45ORF570P | |
580 | M48 family metallopeptidase | |||
3055 | RNA degradosome polyphosphate kinase | |||
3065 | S | S.HpyHPYORF3080P (100% identity) | S.HpyA45ORF3070P | |
3070 | M | M.HpyHPYORF3080P (100% identity) | M.HpyA45ORF3070P | |
3075 | R | Hpy1352ORF3080P (100% identity) | HpyA45ORF3070P | |
3080 | motility associated factor glycosyltransferase | |||
3330 | DNA cytosine methyltransferase | |||
3335 | M | M.HpyHPYORF3345AP (100% identity) | M.HpyA45ORF3335AP | |
3340 | IS607 family transposase | |||
3345 | transposase | |||
3350 | M | M.HpyHPYORF3345BP (100% identity) | M.HpyA45ORF3335BP | |
3355 | S | S.HpyHPYORF3345P (100% identity) | S.HpyA45ORF3335P | |
3360 | R | HpyHPYORF3345P (100% identity) | HpyA45ORF3335P | |
3365 | hydroxyethylthiazole kinase | |||
7710 | nickel-binding protein HpnL | |||
7715 | S | S.HpyHPYORF7745P (100% identity) | S.HpyA45ORF7715P | |
7720 | formyltetrahydrofolate deformylase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
55 | 713 aa hypothetical protein | |||
60 | RM | HpyHPYORF55P (100% identity) | HpyA45ORF60P | |
65 | 132 aa hypothetical protein | |||
140 | outer membrane protein | |||
145 | R | HpyHPYORF145P (100% identity) | CCATC | HpyA45ORF150P |
150 | M | M1.HpyHPYORF145P (100% identity) | CCATC | M1.HpyA45ORF150P |
??? | M | M2.HpyHPYORF145P (100% identity) | CCATC | M2.HpyA45ORF150P |
160 | YjgP/YjgQ family permease | |||
285 | ComF family protein | |||
290 | RM | HpyHPYORF285P (100% identity) | HpyA45ORF290P | |
295 | S | S.HpyHPYORF285P (100% identity) | S.HpyA45ORF290P | |
300 | DNA polymerase I | |||
650 | 67 aa hypothetical protein | |||
655 | M | M.HpyNP03XI (100% identity) | TGCA | M.HpyA45ORF655P |
660 | R | HpyHPYORF655P (100% identity) | TGCA | HpyA45ORF655P |
665 | cytochrome c1 | |||
1180 | agmatine deiminase | |||
1185 | M | M1.HpyHPYORF1190P (100% identity) | CCTC | M1.HpyA45ORF1185P |
1190 | M | M2.HpyHPYORF1190P (100% identity) | CCTC | M2.HpyA45ORF1185P |
1195 | sodium/proline symporter PutP | |||
1375 | ACP S-malonyltransferase | |||
1385 | R | HpyHPYORF1395P (100% identity) | GATC | HpyA45ORF1390P |
1390 | M | M.HpyHPYORF1395P (100% identity) | GATC | M.HpyA45ORF1390P |
1395 | alpha-1,2-fucosyltransferase | |||
2160 | exodeoxyribonuclease VII large subunit | |||
??? | M | M.HpyHPYORF2170P (100% identity) | TCGA | M.HpyA45ORF2165P |
2170 | 80 aa hypothetical protein | |||
2170 | 80 aa hypothetical protein | |||
??? | R | HpyHPYORF2190P (95% identity) | HpyA45ORF2180P | |
2180 | M | M.HpyHPYORF2190AP (100% identity) | M.HpyA45ORF2180AP | |
2185 | transposase | |||
2190 | IS607 family transposase | |||
2195 | M | M.HpyHPYORF2190BP (100% identity) | M.HpyA45ORF2180BP | |
2200 | AAA domain-containing protein | |||
3140 | Hop family outer membrane protein HopJ/HopK | |||
3145 | M | M.HpyHPYORF3155P (100% identity) | ATTAAT | M.HpyA45ORF3145P |
3150 | glycosyltransferase family 9 protein | |||
3155 | translational GTPase TypA | |||
3160 | M | M.HpyHPYORF3170P (100% identity) | M.HpyA45ORF3160P | |
3165 | catalase | |||
3320 | phosphatase PAP2 family protein | |||
3325 | R | HpyHPYORF3340P (100% identity) | HpyA45ORF3330P | |
3330 | M | M.HpyHPYORF3340P (100% identity) | M.HpyA45ORF3330P | |
3335 | type I restriction-modification system subunit | |||
4230 | 449 aa hypothetical protein | |||
4235 | RM | HpyHPYORF4245P (100% identity) | HpyA45ORF4235P | |
4240 | (Fe-S)-binding protein | |||
5135 | flagellar hook protein FlgE | |||
5140 | R | HpyHPYORF5155P (100% identity) | GTNNAC | HpyA45ORF5145P |
5145 | M | M.HpyHPYORF5155P (100% identity) | GTNNAC | M.HpyA45ORF5145P |
5150 | ATP-dependent helicase | |||
6010 | methyltransferase | |||
6015 | M | M.HpyHPYORF6030P (100% identity) | TCNNGA | M.HpyA45ORF6015P |
6020 | R | HpyHPYORF6030P (100% identity) | TCNNGA | HpyA45ORF6015P |
6025 | Laminin subunit alpha-2 precursor | |||
6210 | 144 aa hypothetical protein | |||
??? | M | M.HpyHPYORF6230P (100% identity) | GCGC | M.HpyA45ORF6215P |
6220 | flagellar biosynthesis anti-sigma factor FlgM | |||
6495 | outer membrane beta-barrel protein | |||
6500 | M | M.HpyHPYORF6515P (100% identity) | TCNGA | M.HpyA45ORF6500P |
??? | R | HpyHPYORF6515P (100% identity) | TCNGA | HpyA45ORF6500P |
6510 | purine-nucleoside phosphorylase | |||
6680 | HAD family hydrolase | |||
6685 | M | M.Hpy9192ORF6690P (100% identity) | CATG | M.HpyA45ORF6685P |
6690 | IceA2 protein | |||
7425 | S41 family peptidase | |||
??? | R | HpyHPYORF7465P (100% identity) | GANTC | HpyA45ORF7440P |
7440 | M | M.HpyHPYORF7465P (100% identity) | GANTC | M.HpyA45ORF7440P |
7445 | N-6 DNA methylase | |||
7440 | site-specific DNA-methyltransferase | |||
7445 | RM | Hpy9192ORF7455P (92% identity) | HpyA45ORF7445P | |
7450 | carboxylating nicotinate-nucleotide | |||
7630 | glycosyltransferase family 8 protein | |||
7635 | M | M.HpyHPYORF7665P (100% identity) | GAATTC | M.HpyA45ORF7635P |
7640 | R | HpyHPYORF7665P (100% identity) | GAATTC | HpyA45ORF7635P |
7645 | UDP-N-acetylmuramate dehydrogenase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
??? | M | M.HpyHPYORF40P (100% identity) | M.HpyA45ORF40P | |
50 | R | HpyHPYORF40P (100% identity) | HpyA45ORF40P | |
55 | 713 aa hypothetical protein | |||
4595 | 54 aa hypothetical protein | |||
??? | M | M.HpyHPYORF4610P (100% identity) | M.HpyA45ORF4600P | |
??? | R | HpyHPYORF4610P (100% identity) | HpyA45ORF4600P | |
4610 | 2-oxoglutarate:acceptor oxidoreductase | |||
7500 | copper response regulator transcription factor | |||
7505 | M | M.HpyHPYORF7530P (100% identity) | M.HpyA45ORF7505P | |
7510 | R | HpyHPYORF7530P (100% identity) | HpyA45ORF7505P | |
7515 | rod shape-determining protein MreC | |||
7560 | DNA/RNA non-specific endonuclease | |||
7565 | M | M.HpyHPYORF7590P (100% identity) | M.HpyA45ORF7565P | |
7570 | R | HpyHPYORF7590P (100% identity) | HpyA45ORF7565P | |
7575 | biotin synthase |