Salmonella species SCFS4 |
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Putative Salmonella species SCFS4 RM systems
Ref: He,J. unpublished
REBASE ref # 30307
Complete sequence: 4,988,969 bp
GenBank #: CP051218
REBASE acronym: SenSCFS4
Org_num: 41165
All begin HF553_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4650 | transposase | |||
| 4655 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | SenSCFS4ORF4660P |
| 4660 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.SenSCFS4ORF4660P |
| 4665 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.SenSCFS4ORF4660P |
| 4670 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1905 | cell division protein DamX | |||
| 1910 | M | M.StyTDamP (100% identity) | GATC | M.SenSCFS4DamP |
| 1915 | ribulose-phosphate 3-epimerase | |||
| 2400 | DUF2556 family protein | |||
| 2405 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.SenSCFS4ORF2405P |
| 2410 | DNA-binding transcriptional regulator Fis | |||
| 3315 | DUF3850 domain-containing protein | |||
| 3320 | M | M.SspZ54ORF6040P (100% identity) | M.SenSCFS4ORF3320P | |
| 3325 | replication endonuclease | |||
| 3585 | DEAD/DEAH box helicase | |||
| 3590 | RM | SflLIN17ORF3140P (100% identity) | SenSCFS4ORF3590P | |
| 3595 | IS110 family transposase | |||
| 3715 | TraR/DksA family transcriptional regulator | |||
| 3720 | M | M.SspZ54ORF6265P (100% identity) | M.SenSCFS4ORF3720P | |
| 3725 | replication endonuclease | |||
| 10230 | phosphohydrolase | |||
| 10235 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.SenSCFS4DcmP |
| 10240 | V | V.Sensp14178DcmP (100% identity) | V.SenSCFS4DcmP | |
| 10245 | drug/metabolite exporter YedA | |||
| 14275 | RusA family crossover junction | |||
| ??? | M | M.SenE15ORF13550P (94% identity) | M.SenSCFS4ORF14280P | |
| 14285 | PerC family transcriptional regulator | |||
| 14350 | ead/Ea22-like family protein | |||
| 14355 | M | M.SenS2085ORF15655P (100% identity) | M.SenSCFS4ORF14355P | |
| 14360 | Eaa protein | |||
| 18425 | BREX-1 system phosphatase PglZ type A | |||
| 18430 | RM | Eco9068ORF4119P (100% identity) | SenSCFS4ORF18430P | |
| 18435 | BREX system P-loop protein BrxC | |||
| 20635 | YebC/PmpR family DNA-binding transcriptional | |||
| 20640 | R | Sensp14178ORF19855P (100% identity) | SenSCFS4ORF20640P | |
| 20645 | 347 aa hypothetical protein | |||
| 20680 | RNA polymerase subunit sigma | |||
| ??? | R | SensS90ORFEP (100% identity) | SenSCFS4ORF20685P | |
| 20690 | malate transporter | |||
| 21565 | integrase | |||
| 21570 | R | SflFF24DptFP (100% identity) | SenSCFS4DptFP | |
| 21575 | DNA phosphorothioation-dependent restriction | |||
| 21570 | DNA phosphorothioation-dependent restriction | |||
| 21575 | R | SflFF24DptGP (100% identity) | SenSCFS4DptGP | |
| 21580 | DNA phosphorothioation-dependent restriction | |||
| 21575 | DNA phosphorothioation-dependent restriction | |||
| 21580 | R | EcosEC5DptHP (99% identity) | SenSCFS4DptHP | |
| 21585 | 172 aa hypothetical protein | |||
| 21595 | DGQHR domain-containing protein | |||
| 21600 | M | M.SflFF24DndEP (100% identity) | M.SenSCFS4DndEP | |
| 21605 | DNA sulfur modification protein DndD | |||
| 21600 | DNA sulfur modification protein DndE | |||
| 21605 | M | M.SflFF24DndDP (100% identity) | M.SenSCFS4DndDP | |
| 21610 | DNA phosphorothioation system sulfurtransferase | |||
| 21605 | DNA sulfur modification protein DndD | |||
| 21610 | M | M.SflFF24DndCP (100% identity) | M.SenSCFS4DndCP | |
| 21615 | DNA sulfur modification protein DndB | |||
| 21610 | DNA phosphorothioation system sulfurtransferase | |||
| 21615 | M | M.SflFF24DndBP (100% identity) | M.SenSCFS4DndBP | |
| 21620 | osmoprotectant transport activator ProQ | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 600 | AIPR family protein | |||
| 605 | M | M.SflFF17ORF4015P (100% identity) | GTCTC | M.SenSCFS4ORF605P |
| 610 | R | SflFF17ORF4015P (100% identity) | GTCTC | SenSCFS4ORF605P |
| 615 | 224 aa hypothetical protein | |||
| 18155 | 33 aa hypothetical protein | |||
| 18160 | R | Sensp14154ORF17330P (90% identity) | CAGAG | SenSCFS4ORF18175P |
| 18165 | IS1 family transposase | |||
| 18170 | DEAD/DEAH box helicase family protein | |||
| 18175 | M | M.Sensp14178ORF17290P (100% identity) | CAGAG | M.SenSCFS4ORF18175P |
| 18180 | MFS transporter | |||
| 20710 | S8 family peptidase | |||
| 20715 | M | M.Sensp14178ORF19930P (100% identity) | CGGAAC | M.SenSCFS4ORF20715P |
| 20720 | R | Sensp14178ORF19930P (100% identity) | CGGAAC | SenSCFS4ORF20715P |
| 20725 | integrase arm-type DNA-binding domain-containing | |||