Bacteroides dorei JR03 |
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Putative Bacteroides dorei JR03 RM systems
Ref: Russell,J.T. unpublished
REBASE ref # 29777
Complete sequence: 5,510,617 bp
GenBank #: CP046426
REBASE acronym: BdoJR03
Org_num: 39852
All begin GN307_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1395 | recombinase | |||
| 1400 | C | C.Msa17ORFG1P (100% identity) | C.BdoJR03IIIP | |
| 1405 | M | M1.Bth576ORF2630P (100% identity) | AAGNNNNNGGC | M1.BdoJR03III |
| 1410 | M | M2.Bth576ORF2630P (100% identity) | AAGNNNNNGGC | M2.BdoJR03III |
| 1415 | S | S1.BdoJR01ORF21160P (50% identity) | AAGNNNNNGGC | S1.BdoJR03III |
| 1420 | DNA damage-inducible protein D | |||
| 1425 | tyrosine-type recombinase/integrase | |||
| 1430 | S | S2.Bfr4ORF2110P (54% identity) | AAGNNNNNGGC | S2.BdoJR03III |
| 1435 | R | Bfr4ORF2110P (100% identity) | AAGNNNNNGGC | BdoJR03IIIP |
| 1440 | 504 aa hypothetical protein | |||
| 16380 | cell surface protein | |||
| 16385 | S | S5.Pvu1098ORF7795P (98% identity) | S3.BdoJR03IP | |
| 16390 | tyrosine-type recombinase/integrase | |||
| 16395 | restriction endonuclease subunit S | |||
| 16400 | S | S2.Pvu1098ORF7795P (100% identity) | GAAGNNNNNNNTCC | S2.BdoJR03I |
| 16405 | DUF1016 family protein | |||
| 16410 | tyrosine-type recombinase/integrase | |||
| 16415 | tyrosine-type recombinase/integrase | |||
| 16420 | tyrosine-type recombinase/integrase | |||
| 16430 | S | S1.BdoJR02IIP (100% identity) | S1.BdoJR03IP | |
| 16435 | M | M.Pdo3716YORF13100P (100% identity) | GAAGNNNNNNNTCC | M.BdoJR03I |
| 16440 | R | Pdo1046IIIP (100% identity) | GAAGNNNNNNNTCC | BdoJR03IP |
| 16445 | C | C.Pvu201ORF22395P (100% identity) | C.BdoJR03IP | |
| 16450 | DUF4357 domain-containing protein | |||
| 18320 | S-adenosylmethionine:tRNA | |||
| 18325 | M | M.PmeBin22ORFCP (100% identity) | RAACNNNNNNRTTG | M.BdoJR03II |
| 18330 | S | S1.Pdo3716YORF6360P (100% identity) | RAACNNNNNNRTTG | S.BdoJR03II |
| 18335 | DUF1016 family protein | |||
| 18340 | tyrosine-type recombinase/integrase | |||
| 18345 | tyrosine-type recombinase/integrase | |||
| 18350 | tyrosine-type recombinase/integrase | |||
| 18355 | DUF1016 family protein | |||
| 18360 | R | Pdo17855ORF1705P (100% identity) | RAACNNNNNNRTTG | BdoJR03IIP |
| 18365 | WYL domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6335 | 511 aa hypothetical protein | |||
| 6340 | M | M.BdoJR02ORF6345P (100% identity) | M.BdoJR03ORF6340P | |
| 6345 | DUF4143 domain-containing protein | |||
| 6450 | DNA primase | |||
| ??? | M | M.PmeBin28ORFCP (100% identity) | M.BdoJR03ORF6455P | |
| 6465 | TraM recognition domain-containing protein | |||
| 6850 | toxin Bro | |||
| 6860 | M | M.PmeBin28ORFBP (100% identity) | M.BdoJR03ORF6860P | |
| 6865 | 115 aa hypothetical protein | |||
| 13260 | conjugative transposon protein TraN | |||
| 13265 | M | M.Bth119ORF13585P (100% identity) | M.BdoJR03ORF13265P | |
| 13270 | 117 aa hypothetical protein | |||
| 13295 | DUF5045 domain-containing protein | |||
| 13300 | M | M.Bth266ORF14520P (100% identity) | M.BdoJR03ORF13300P | |
| 13305 | 240 aa hypothetical protein | |||
| 14275 | conjugal transfer protein TraO | |||
| 14280 | M | M.Pdo1046ORF15070P (100% identity) | M.BdoJR03ORF14280P | |
| 14285 | DUF3872 domain-containing protein | |||
| 15600 | alpha-amylase | |||
| 15605 | R | Pdo3C03ORF1868P (100% identity) | BdoJR03ORF15605P | |
| 15610 | 71 aa hypothetical protein | |||