Bacteroides dorei JR04 |
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Putative Bacteroides dorei JR04 RM systems
Ref: Russell,J.T. unpublished
REBASE ref # 29777
Complete sequence: 5,575,489 bp
GenBank #: CP046427
REBASE acronym: BdoJR04
Org_num: 39853
All begin GN308_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8925 | tyrosine-type recombinase/integrase | |||
| 8930 | S | S4.BdoJR05IP (100% identity) | S4.BdoJR04IIP | |
| 8935 | 189 aa hypothetical protein | |||
| 8940 | S | S3.BdoJR05IP (100% identity) | S3.BdoJR04IIP | |
| 8945 | S | S2.BdoJR05I (100% identity) | CAAYNNNNNNNRTAG | S2.BdoJR04II |
| 8950 | 168 aa hypothetical protein | |||
| 8955 | S | S1.BthC24ORF5280P (100% identity) | S1.BdoJR04IIP | |
| 8960 | M | M.BdoJR05I (100% identity) | CAAYNNNNNNNRTAG | M.BdoJR04II |
| 8965 | R | BdoJR05IP (100% identity) | CAAYNNNNNNNRTAG | BdoJR04IIP |
| 8970 | C | C.PhoHDD12ORF16045P (100% identity) | C.BdoJR04IIP | |
| 8975 | tyrosine-type recombinase/integrase | |||
| 17600 | tyrosine-type recombinase/integrase | |||
| 17605 | S | S4.Pvu3C24ORF1046P (100% identity) | S2.BdoJR04ORF17615P | |
| 17610 | S | S2.Pdo1051I (100% identity) | S1.BdoJR04ORF17615P | |
| 17615 | M | M.Pdo3C03ORF2038P (100% identity) | M.BdoJR04ORF17615P | |
| 17620 | R | Pdo1ORF14765P (100% identity) | BdoJR04ORF17615P | |
| 17625 | C | C.Pvu201ORF22395P (100% identity) | C.BdoJR04ORF17615P | |
| 17630 | DUF4357 domain-containing protein | |||
| 19475 | S-adenosylmethionine:tRNA | |||
| 19480 | M | M.PmeBin22ORFCP (100% identity) | CAAYNNNNNNCTG | M.BdoJR04III |
| 19485 | S | S1.Pdo1051II (100% identity) | CAAYNNNNNNCTG | S1.BdoJR04III |
| 19490 | S | S2.PmeBin22ORFCP (100% identity) | S2.BdoJR04IIIP | |
| 19495 | R | Pdo17855ORF1705P (100% identity) | CAAYNNNNNNCTG | BdoJR04IIIP |
| 19500 | WYL domain-containing protein | |||
| 22560 | 182 aa hypothetical protein | |||
| 22565 | S | S3.Bsp3716PORF21890P (54% identity) | S4.BdoJR04IP | |
| 22570 | tyrosine-type recombinase/integrase | |||
| 22575 | S | S3.BdoJR05III (100% identity) | CAGNNNNNTGT | S3.BdoJR04I |
| 22580 | S | S2.Bov299ORF4215P (100% identity) | S2.BdoJR04IP | |
| 22585 | 99 aa hypothetical protein | |||
| 22590 | S | S1.Bsp3716PORF21890P (100% identity) | S1.BdoJR04IP | |
| ??? | M | M.BdoJR05III (100% identity) | CAGNNNNNTGT | M.BdoJR04I |
| 22600 | R | Bsp3716PORF21890P (100% identity) | CAGNNNNNTGT | BdoJR04IP |
| 22605 | helix-turn-helix domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1700 | DUF3846 domain-containing protein | |||
| ??? | M | M.Bfr18BORF3050P (100% identity) | M.BdoJR04ORF1705P | |
| 1715 | 156 aa hypothetical protein | |||
| 2090 | recombinase family protein | |||
| 2095 | M | M.Pdo1051ORF20555P (100% identity) | M.BdoJR04ORF2095P | |
| 2100 | 320 aa hypothetical protein | |||
| 5610 | DNA-binding protein | |||
| 5615 | V | V.Pdo1051ORF4310P (100% identity) | V.BdoJR04ORF5625P | |
| 5620 | R | R1.Pdo1051ORF4310P (100% identity) | R1.BdoJR04ORF5625P | |
| 5625 | M | M1.Pdo1051ORF4310P (100% identity) | M1.BdoJR04ORF5625P | |
| 5630 | M | M2.Pdo1051ORF4310P (100% identity) | M2.BdoJR04ORF5625P | |
| 5635 | C | C.Pdo1051ORF4310P (100% identity) | C.BdoJR04ORF5625P | |
| 5640 | R | R2.Pdo1051ORF4310P (100% identity) | R2.BdoJR04ORF5625P | |
| 5645 | AAA family ATPase | |||
| 9225 | radical SAM protein | |||
| 9230 | M | M.Pdo1047IV (100% identity) | M.BdoJR04ORF9230P | |
| 9235 | peptidoglycan DD-metalloendopeptidase family | |||
| 10885 | 65 aa hypothetical protein | |||
| 10890 | M | M.BdoJR05ORF12275P (100% identity) | M.BdoJR04ORF10890P | |
| 10895 | DUF4373 domain-containing protein | |||
| 14980 | ATP-binding protein | |||
| 14985 | M | M.Pdo1051ORF13020P (100% identity) | M.BdoJR04ORF14985P | |
| 14990 | 60 aa hypothetical protein | |||
| 15560 | ornithine cyclodeaminase | |||
| 15565 | M | M.Uph2207ORFAP (100% identity) | M.BdoJR04ORF15565P | |
| 15570 | thymidylate synthase | |||
| 16150 | alpha-amylase | |||
| 16155 | R | Pdo1051ORF14185P (100% identity) | BdoJR04ORF16155P | |
| 16160 | 71 aa hypothetical protein | |||
| 16365 | 204 aa hypothetical protein | |||
| 16370 | M | M.BdoJR05ORF6795P (100% identity) | M.BdoJR04ORF16370P | |
| 16375 | 190 aa hypothetical protein | |||
| 16380 | 335 aa hypothetical protein | |||
| 16385 | M | M.BdoJR05ORF6780P (100% identity) | M.BdoJR04ORF16385P | |
| 16390 | phosphoadenosine phosphosulfate reductase family | |||
| 22600 | HsdR family type I site-specific | |||
| 22605 | C | C.Bsp3716PORF21890P (100% identity) | C.BdoJR04ORF22605P | |
| 22610 | 317 aa hypothetical protein | |||