Escherichia coli SCU-105 |
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Putative Escherichia coli SCU-105 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30306
| Sequence length: | GenBank #: | |
| Chromosome: | 5,166,012 bp | CP051738 |
| plasmid pSCU-105-1: | 172,627 bp | CP051739 |
| plasmid pSCU-105-4: | 6,265 bp | CP051742 |
REBASE acronym: EcoSCU105
Org_num: 40057
All begin HHJ23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21295 | DUF262 domain-containing protein | |||
| 21300 | M | M.Ecos135ORF4680P (100% identity) | M.EcoSCU105ORF21300P | |
| 21305 | S | S.Ecos135ORF4680P (100% identity) | S.EcoSCU105ORF21300P | |
| 21310 | R | Eco592ORFFP (100% identity) | EcoSCU105ORF21300P | |
| 21315 | 237 aa hypothetical protein | |||
| 21505 | N-6 DNA methylase | |||
| 21510 | R | EcoTCM3e1ORF20315P (100% identity) | EcoSCU105ORF21520P | |
| 21515 | S | S.EcoPF15ORF2040P (100% identity) | S.EcoSCU105ORF21520P | |
| 21520 | M | M2.Eco592ORFBP (93% identity) | M2.EcoSCU105ORF21520P | |
| 21525 | IS3 family transposase | |||
| 21530 | M | M1.SspPIBORF19375P (100% identity) | M1.EcoSCU105ORF21520P | |
| 21535 | toll/interleukin-1 receptor domain-containing | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1775 | cell division protein DamX | |||
| 1780 | M | M.Ecos69DamP (100% identity) | GATC | M.EcoSCU105DamP |
| 1785 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.EcoSCU105ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 2820 | bacteriophage CI repressor | |||
| 2825 | M | M.KpnYN1ORFGP (88% identity) | M.EcoSCU105ORF2825P | |
| 2830 | 74 aa hypothetical protein | |||
| 8690 | TrmB family transcriptional regulator | |||
| 8695 | M | M.SflJ17BORF23540P (100% identity) | A | M.EcoSCU105ORF8695P |
| 8715 | DUF1737 domain-containing protein | |||
| 10115 | phosphohydrolase | |||
| 10120 | M | M.EcoPF15DcmP (100% identity) | CCWGG | M.EcoSCU105DcmP |
| 10125 | V | V.Ecostr9DcmP (74% identity) | V.EcoSCU105DcmP | |
| 10130 | drug/metabolite exporter YedA | |||
| 16405 | replication endonuclease | |||
| 16410 | M | M.EcoEC0011ORF14945P (100% identity) | GATC | M.EcoSCU105ORF16410P |
| 16415 | TraR/DksA family transcriptional regulator | |||
| 17080 | LexA family transcriptional regulator | |||
| 17085 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoSCU105ORF17085P |
| 17090 | PerC family transcriptional regulator | |||
| plasmid pSCU-105-1 | ||||
| 25240 | 73 aa hypothetical protein | |||
| 25245 | M | M.Ecos69ORF26765P (100% identity) | M.EcoSCU105ORF25245P | |
| 25250 | 103 aa hypothetical protein | |||
| plasmid pSCU-105-4 | ||||
| 25815 | 122 aa hypothetical protein | |||
| 25820 | M | M.EcoA5905ORF27205P (98% identity) | M.EcoSCU105ORF25820P | |
| 25825 | R | EcoA5905ORF27205P (100% identity) | EcoSCU105ORF25820P | |
| 25830 | C | C.EcoA5905ORF27205P (100% identity) | C.EcoSCU105ORF25820P | |
| 25835 | MbeD family mobilization/exclusion protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9525 | integrase arm-type DNA-binding domain-containing | |||
| 9530 | M | M.Kgr866ORF10820P (26% identity) | M.EcoSCU105ORF9530AP | |
| 9535 | IS3 family transposase | |||
| 9540 | IS3 family transposase | |||
| 9545 | M | M.Ecos164ORF9105P (71% identity) | M.EcoSCU105ORF9530BP | |
| 9550 | R | Ecos164ORF9105P (100% identity) | EcoSCU105ORF9530P | |
| 9555 | prepilin-type N-terminal cleavage/methylation | |||