Escherichia coli SCU-484 |
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Putative Escherichia coli SCU-484 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30306
| Sequence length: | GenBank #: | |
| Chromosome: | 5,139,277 bp | CP051744 |
| plasmid pSCU-484-1: | 80,332 bp | CP051745 |
| plasmid pSCU-484-3: | 6,320 bp | CP051747 |
REBASE acronym: EcoSCU484
Org_num: 40077
All begin HHJ53_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20435 | restriction endonuclease | |||
| 20440 | M | M.EcosA4II (100% identity) | M.EcoSCU484ORF20440P | |
| 20445 | S | S.EcosA4II (100% identity) | S.EcoSCU484ORF20440P | |
| 20450 | R | EcosA4IIP (100% identity) | EcoSCU484ORF20440P | |
| 20455 | endoribonuclease SymE | |||
| 20705 | DUF4942 domain-containing protein | |||
| 20710 | M | M.EcosA4I (100% identity) | M.EcoSCU484ORF20710P | |
| 20715 | S | S.EcoJA19ORFGP (100% identity) | S1.EcoSCU484ORF20710P | |
| 20720 | IS110-like element ISEc45 family transposase | |||
| 20725 | S | S.EcosA4I (40% identity) | S2.EcoSCU484ORF20710P | |
| 20730 | R | EcosA33IP (100% identity) | EcoSCU484ORF20710P | |
| 20740 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1660 | cell division protein DamX | |||
| 1665 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSCU484DamP |
| 1670 | ribulose-phosphate 3-epimerase | |||
| 2260 | DUF2556 family protein | |||
| 2265 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSCU484ORF2265P |
| 2270 | DNA-binding transcriptional regulator Fis | |||
| 9470 | phosphohydrolase | |||
| 9475 | M | M.EcosA33DcmP (100% identity) | CCWGG | M.EcoSCU484DcmP |
| 9480 | V | V.EcosA4DcmP (100% identity) | V.EcoSCU484DcmP | |
| 9485 | drug/metabolite exporter YedA | |||
| 15805 | replication endonuclease | |||
| 15810 | M | M.EcoSCU204ORF10940P (97% identity) | GATC | M.EcoSCU484ORF15810P |
| 15815 | TraR/DksA family transcriptional regulator | |||
| 20685 | HNH endonuclease | |||
| 20690 | R | EcosA4ORF22115P (100% identity) | EcoSCU484ORF20690P | |
| 20695 | McrC family protein | |||
| 22570 | phage lysis protein EssD | |||
| 22575 | M | M.Sso63633ORF22290P (100% identity) | M.EcoSCU484ORF22575P | |
| 22580 | 67 aa hypothetical protein | |||
| 22610 | LexA family transcriptional regulator | |||
| 22615 | M | M1.EcoRS218ORF22130P (100% identity) | GATC | M.EcoSCU484ORF22615P |
| 22620 | PerC family transcriptional regulator | |||
| plasmid pSCU-484-1 | ||||
| 24670 | 103 aa hypothetical protein | |||
| 24675 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoSCU484ORF24675P | |
| 24680 | 73 aa hypothetical protein | |||
| plasmid pSCU-484-3 | ||||
| 25115 | Rop family plasmid primer RNA-binding protein | |||
| 25120 | M | M.EcoNDM1ORF25400P (100% identity) | GATATC | M.EcoSCU484ORF25120P |
| 25125 | C | C.EcoRV (100% identity) | CCCATTTTGGG | C.EcoSCU484ORF25120P |
| 25130 | R | EcoRV (100% identity) | GATATC | EcoSCU484ORF25120P |
| 25095 | MbeD family mobilization/exclusion protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20690 | HNH endonuclease | |||
| 20695 | R | EcosA4McrCP (100% identity) | EcoSCU484McrCP | |
| 20700 | R | EcosA4McrBP (100% identity) | EcoSCU484McrBP | |
| 20705 | DUF4942 domain-containing protein | |||