Ref: Copeland,A. et al. unpublished

REBASE ref # 18337

Sequence length:GenBank #:
Chromosome: 6,365,727 bp CP000117 (NC_007413)
plasmid A: 366,354 bp CP000119 (NC_007410)
plasmid C: 300,758 bp CP000121 (NC_007412)
plasmid D: 27,051 bp KC733807

REBASE acronym: AvaB

Org_num: 4179

 

All begin Ava_, Ava_B, Ava_C, AvaD_

Type I
ORF Gene Most similar Specificity Name
 
Chromosome
 
1155 metal-dependent hydrolase-like protein
1156 R Csp4101ORF28630P (0% identity) AvaBORF1159P
1157 Predicted transcriptional regulator
1158 S S1.Csp4101ORF28630P (0% identity) S.AvaBORF1159P
1159 M M.Csp4101ORF28630P (0% identity) M.AvaBORF1159P
1160 Possible Transcriptional Regulator, MerR family
 
3266 114 aa conserved hypothetical protein
3267 S S.Tte7101ORF41340P (0% identity) S.AvaBORF3271P
3268 72 aa conserved hypothetical protein
3269 PilT protein-like protein
3270 86 aa conserved hypothetical protein
3271 M M.AvaORF3475P (0% identity) M.AvaBORF3271P
3272 330 aa conserved hypothetical protein
3273 R AvaORF3475P (0% identity) AvaBORF3271P
3274 transcriptional regulator, AbrB family
 
3497 97 aa hypothetical protein
3498 M M.Asp33047ORFEP (0% identity) M.AvaBORF3498P
3499 S S.Asp33047ORFEP (0% identity) S.AvaBORF3498P
3500 Protein of unknown function UPF0175
3501 165 aa conserved hypothetical protein
3502 R Cst7417ORF4792P (0% identity) AvaBORF3498P
3503 AAA ATPase, central region
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
100 Protein of unknown function DUF820
101 M M.AvaVIII (0% identity) CGATCG M.AvaBORF101P
102 286 aa conserved hypothetical protein
 
730 Deoxyribose-phosphate aldolase
731 M M.AvaIX (0% identity) RCCGGY M.AvaBORF731P
732 481 aa conserved hypothetical protein
 
1325 SNF2-related Helicase
1326 RM Nsp7107ORF4712P (0% identity) AvaBORF1326P
1327 Transposase IS200-like protein
 
2189 type III restriction enzyme, res subunit
2190 M M.Ncy582ORF26380P (0% identity) M.AvaBORF2190P
2191 121 aa conserved hypothetical protein
 
2662 Protein of unknown function DUF427
2663 M M.AvaVI (0% identity) GATC M.AvaBORF2663P
2664 Protein of unknown function DUF751
 
3013 70 aa conserved hypothetical protein
3014 M M.Ava23ORF50900P (0% identity) CAGCTG M.AvaBORF3014P
3015 Cyanase
 
3179 88 aa conserved hypothetical protein
3180 R AvaI (0% identity) CYCGRG AvaBORF3181P
3181 M M.AvaI (0% identity) CYCGRG M.AvaBORF3181P
3182 Peptidases M20 and M42
 
4358 signal recognition particle subunit FFH/SRP54
4359 M M.AvrII (1% identity) CCTAGG M.AvaBORF4359P
4360 R AvrII (0% identity) CCTAGG AvaBORF4359P
4361 urea-binding protein
 
4406 263 aa conserved hypothetical protein
4407 M M.AvaVII (0% identity) GGCC M.AvaBORF4407P
4408 anthranilate phosphoribosyltransferase
 
plasmid A
 
329 130 aa conserved hypothetical protein
330 M M.AvaORF7369P (0% identity) YGGCCR M.AvaBORF330P
331 Protein of unknown function DUF1392
 
plasmid C
 
222 184 aa conserved hypothetical protein
223 RM Nca2107ORF73370P (0% identity) AvaBORF223P
224 ATPase
 
231 195 aa conserved hypothetical protein
232 M M.NspN6ORF2030P (0% identity) M.AvaBORF232P
233 Type III restriction enzyme, res subunit
 
plasmid D
 
1 RM Tva0441ORF29585P (1% identity) AvaBORF1P
2 S S.AvrORFOP (1% identity) S.AvaBORF1P
3 ParA-like plasmid partition protein
Type IV
ORF Gene Most similar Specificity Name
 
plasmid A
 
90 706 aa conserved hypothetical protein
91 R AvaMrrP (0% identity) AvaBMrrP
92 119 aa conserved hypothetical protein