Yokenella regensburgei W13 |
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Putative Yokenella regensburgei W13 RM systems
Ref: Zhou,D. et al. unpublished
REBASE ref # 30416
| Sequence length: | GenBank #: | |
| Chromosome: | 4,962,579 bp | CP050811 |
| plasmid pYRW13-125: | 125,281 bp | CP050812 |
| plasmid pYRW13-131: | 131,292 bp | CP050813 |
REBASE acronym: YreW13
Org_num: 40337
All begin HEC60_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20395 | AAA domain-containing protein | |||
| 20400 | R | Cpo1IP (97% identity) | YreW13ORF20410P | |
| 20405 | S | S.CbrE3C07ORF3295P (62% identity) | S.YreW13ORF20410P | |
| 20410 | M | M.Kqu2014ORF22625P (97% identity) | M.YreW13ORF20410P | |
| 20415 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2075 | molecular chaperone DnaJ | |||
| 2080 | M | M.SenNWU5ORF24130P (84% identity) | M.YreW13ORF2080P | |
| 2085 | ASCH domain-containing protein | |||
| 8375 | RusA family crossover junction | |||
| 8380 | M | M.Cfr214ORF14695P (56% identity) | M.YreW13ORF8380P | |
| 8385 | 98 aa hypothetical protein | |||
| 8400 | 146 aa hypothetical protein | |||
| 8405 | M | M.Cko10770ORF4890P (87% identity) | M.YreW13ORF8405P | |
| 8410 | 73 aa hypothetical protein | |||
| 8975 | 54 aa hypothetical protein | |||
| 8980 | M | M.EclWP8ORF27450P (98% identity) | M.YreW13ORF8980P | |
| 8985 | DNA cytosine methyltransferase | |||
| 8980 | DNA methyltransferase | |||
| 8985 | M | M1.Eas1373ORF9760P (93% identity) | M.YreW13ORF8985P | |
| 8990 | 72 aa hypothetical protein | |||
| 9000 | TraR/DksA family transcriptional regulator | |||
| 9005 | M | M.EcaEb1ORF9855P (96% identity) | M.YreW13ORF9005P | |
| 9010 | DUF4222 domain-containing protein | |||
| 9130 | drug/metabolite exporter YedA | |||
| 9135 | V | V.Yre11968DcmP (97% identity) | V.YreW13DcmP | |
| ??? | M | M.Yre11968DcmP (100% identity) | M.YreW13DcmP | |
| 9145 | phosphohydrolase | |||
| 16340 | ribulose-phosphate 3-epimerase | |||
| 16345 | M | M.Yre11968DamP (100% identity) | M.YreW13DamP | |
| 16350 | cell division protein DamX | |||
| 23780 | recombination protein NinG | |||
| 23785 | M | M.PagASB05ORF5705P (77% identity) | M.YreW13ORF23785P | |
| 23790 | protein ninH | |||
| plasmid pYRW13-125 | ||||
| 24345 | 155 aa hypothetical protein | |||
| 24350 | M | M.EhosBWORF25210P (100% identity) | M.YreW13ORF24350P | |
| 24355 | 73 aa hypothetical protein | |||
| plasmid pYRW13-131 | ||||
| 25370 | type VI secretion system baseplate subunit TssG | |||
| ??? | M | M.Kmi7525ORF4110P (99% identity) | M.YreW13ORF25375P | |
| 25380 | R | SenS7VPHORF4215P (93% identity) | YreW13ORF25375P | |
| 25385 | type IV secretion system DNA-binding | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20385 | 95 aa hypothetical protein | |||
| 20390 | R | CfrLDL33McrCP (97% identity) | YreW13McrCP | |
| 20395 | R | CfrLDL33McrBP (97% identity) | YreW13McrBP | |
| 20400 | type I restriction endonuclease subunit R | |||