Salmonella enterica subsp. enterica serovar Indiana SI108 |
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Putative Salmonella enterica subsp. enterica serovar Indiana SI108 RM systems
Ref: Chen,Z. unpublished
REBASE ref # 29897
| Sequence length: | GenBank #: | |
| Chromosome: | 4,925,928 bp | CP050769 |
| plasmid pSI108-1: | 145,548 bp | CP050770 |
REBASE acronym: SenSI108
Org_num: 41088
All begin HEC80_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1740 | cell division protein DamX | |||
| 1745 | M | M.StyTDamP (100% identity) | GATC | M.SenSI108DamP |
| 1750 | ribulose-phosphate 3-epimerase | |||
| 2235 | DUF2556 family protein | |||
| 2240 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.SenSI108ORF2240P |
| 2245 | DNA-binding transcriptional regulator Fis | |||
| 3250 | replication endonuclease | |||
| 3255 | M | M.SspZ54ORF6040P (100% identity) | M.SenSI108ORF3255P | |
| 3260 | DUF3850 domain-containing protein | |||
| 3730 | DEAD/DEAH box helicase family protein | |||
| 3735 | RM | SflLIN17ORF3140P (100% identity) | SenSI108ORF3735P | |
| 3740 | IS110 family transposase | |||
| 3850 | TraR/DksA family transcriptional regulator | |||
| 3855 | M | M.SspZ54ORF6265P (100% identity) | M.SenSI108ORF3855P | |
| 3860 | replication endonuclease | |||
| 9965 | phosphohydrolase | |||
| 9970 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.SenSI108DcmP |
| 9975 | V | V.Sensp14178DcmP (100% identity) | V.SenSI108DcmP | |
| 9980 | drug/metabolite exporter YedA | |||
| 20470 | YebC/PmpR family DNA-binding transcriptional | |||
| 20475 | R | Sensp14178ORF19855P (100% identity) | SenSI108ORF20475P | |
| 20480 | 347 aa hypothetical protein | |||
| 20515 | RNA polymerase subunit sigma | |||
| ??? | R | SensS90ORFEP (100% identity) | SenSI108ORF20520P | |
| 20525 | malate transporter | |||
| plasmid pSI108-1 | ||||
| 24025 | 55 aa hypothetical protein | |||
| 24030 | M | M.YpsF1ORFCP (100% identity) | M.SenSI108ORF24030P | |
| 24035 | thermonuclease family protein | |||
| 24660 | 73 aa hypothetical protein | |||
| 24665 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.SenSI108ORF24665P |
| 24670 | 102 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17830 | 33 aa hypothetical protein | |||
| 17835 | R | Sensp14154ORF17330P (100% identity) | CAGAG | SenSI108ORF17845P |
| 17840 | IS1 family transposase | |||
| 17845 | M | M.Sensp14152ORF17835P (100% identity) | CAGAG | M.SenSI108ORF17845P |
| 17850 | MFS transporter | |||
| 20545 | S8 family peptidase | |||
| 20550 | M | M.Sensp14178ORF19930P (100% identity) | CGGAAC | M.SenSI108ORF20550P |
| 20555 | R | Sensp14178ORF19930P (100% identity) | CGGAAC | SenSI108ORF20550P |
| 20560 | integrase arm-type DNA-binding domain-containing | |||