Citrobacter species Y3 |
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Putative Citrobacter species Y3 RM systems
Ref: Peng,X. unpublished
REBASE ref # 30400
| Sequence length: | GenBank #: | |
| Chromosome: | 5,246,113 bp | CP050009 |
| plasmid unnamed2: | 89,705 bp | CP050011 |
REBASE acronym: CspY3
Org_num: 40313
All begin HAP28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21830 | toll/interleukin-1 receptor domain-containing | |||
| 21835 | R | Csp92ORF446P (100% identity) | CspY3ORF21840P | |
| 21840 | M | M.Csp92ORF446P (100% identity) | M.CspY3ORF21840P | |
| 21845 | S | S.Csp92ORF446P (99% identity) | S.CspY3ORF21840P | |
| 21850 | 5-nucleotidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 460 | DUF262 domain-containing protein | |||
| 465 | RM | KspBL05ORF41950AP (100% identity) | CspY3ORF465AP | |
| 470 | 154 aa hypothetical protein | |||
| 475 | Reverse transcriptase | |||
| 480 | RM | KspBL02ORF42510BP (100% identity) | CspY3ORF465BP | |
| 485 | BREX-1 system phosphatase PglZ type A | |||
| 2000 | cell division protein DamX | |||
| 2005 | M | M.CspNIH10DamP (100% identity) | GATC | M.CspY3DamP |
| 2010 | ribulose-phosphate 3-epimerase | |||
| 2490 | DUF2556 family protein | |||
| 2495 | M | M.CspC17ORF2350P (100% identity) | ATGCAT | M.CspY3ORF2495P |
| 2500 | DNA-binding transcriptional regulator Fis | |||
| 9555 | 82 aa hypothetical protein | |||
| 9560 | M | M.Sens29945ORF7970P (94% identity) | M.CspY3ORF9560P | |
| 9565 | 86 aa hypothetical protein | |||
| 9565 | 86 aa hypothetical protein | |||
| 9570 | M | M.Csp411ORF10990P (98% identity) | M.CspY3ORF9570P | |
| 9575 | 112 aa hypothetical protein | |||
| 13975 | recombinase family protein | |||
| 13980 | R | Sen23701ORF24490P (100% identity) | CCWGG | CspY3ORF13985P |
| 13985 | M | M.EcoSK3ORF22595P (100% identity) | CCWGG | M.CspY3ORF13985P |
| 13990 | IS1 family transposase | |||
| 15710 | drug/metabolite exporter YedA | |||
| 15715 | V | V.CspC470DcmP (100% identity) | V.CspY3DcmP | |
| 15720 | M | M.CspNIH10DcmP (100% identity) | CCWGG | M.CspY3DcmP |
| 15725 | phosphohydrolase | |||
| 17830 | antitermination protein | |||
| 17835 | M | M.Cam166ORF1550P (98% identity) | M.CspY3ORF17835P | |
| 17840 | NinG family protein | |||
| 19180 | phage holin, lambda family | |||
| 19185 | M | M.Cam22ORF8955P (98% identity) | M.CspY3ORF19185P | |
| 19190 | TrmB family transcriptional regulator | |||
| 21650 | IS3 family transposase | |||
| 21655 | R | Csp92ORF412P (100% identity) | CspY3ORF21655P | |
| 21660 | SLATT domain-containing protein | |||
| 21855 | AAA family ATPase | |||
| 21860 | R | SneS01ORFDP (96% identity) | CspY3ORF21860P | |
| 21865 | integrase arm-type DNA-binding domain-containing | |||
| 24140 | ImmA/IrrE family metallo-endopeptidase | |||
| 24145 | M | M.CfrS1ORF25340P (98% identity) | M.CspY3ORF24145P | |
| 24150 | replication endonuclease | |||
| 24150 | replication endonuclease | |||
| 24155 | M | M.Eas2497ORF25260P (97% identity) | M.CspY3ORF24155P | |
| 24160 | Dam family site-specific | |||
| plasmid unnamed2 | ||||
| 25715 | 73 aa hypothetical protein | |||
| 25720 | M | M.Cam1661ORF46290P (99% identity) | M.CspY3ORF25720P | |
| 25725 | 155 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3470 | inovirus Gp2 family protein | |||
| 3475 | R | Kox87739ORFCP (99% identity) | CspY3ORF3480P | |
| 3480 | M | M.Sen5006ORF16245P (100% identity) | M.CspY3ORF3480BP | |
| 3485 | Cd(II)/Pb(II)-responsive transcriptional | |||
| 3490 | cation transporter | |||
| 3495 | signal peptidase II | |||
| 3500 | ISL3-like element ISPpu12 family transposase | |||
| 3505 | M | M.KoxNIH4ORF24775P (55% identity) | M.CspY3ORF3480AP | |
| 3510 | 63 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24155 | DNA cytosine methyltransferase | |||
| 24160 | M | M.Eas22ORF22580P (99% identity) | M.CspY3ORF24160P | |
| 24165 | 82 aa hypothetical protein | |||