Escherichia coli p4A |
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Putative Escherichia coli p4A RM systems
Ref: Shropshire,W.C. unpublished
REBASE ref # 30315
Complete sequence: 5,255,749 bp
GenBank #: CP049085
REBASE acronym: Ecop4A
Org_num: 40097
All begin G6P91_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19485 | type IV toxin-antitoxin system AbiEi family | |||
| 19490 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Ecop4AORF19495P |
| 19495 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Ecop4AORF19495P |
| 19500 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Ecop4AORF19495P |
| 25780 | ash family protein | |||
| 21285 | restriction endonuclease | |||
| 21290 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Ecop4AORF21290P |
| 21295 | S | S.Ecou021ORF19870P (96% identity) | RTACNNNNGTG | S.Ecop4AORF21290P |
| 21300 | IS1 family transposase | |||
| 21305 | R | EcosS9ORF3165P (37% identity) | RTACNNNNGTG | Ecop4AORF21290P |
| 21310 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1670 | cell division protein DamX | |||
| 1675 | M | M.SspPIBDamP (100% identity) | GATC | M.Ecop4ADamP |
| 1680 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 family protein | |||
| 2275 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Ecop4AORF2275P |
| 2280 | DNA-binding transcriptional regulator Fis | |||
| 6010 | PerC family transcriptional regulator | |||
| 6015 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.Ecop4AORF6015P |
| 6020 | LexA family transcriptional regulator | |||
| 6055 | 67 aa hypothetical protein | |||
| 6060 | M | M.EcosR6ORF7985P (100% identity) | M.Ecop4AORF6060P | |
| 6065 | phage lysis protein EssD | |||
| 6190 | 257 aa hypothetical protein | |||
| 6195 | M | M.SflSTLE1ORF5615P (100% identity) | M.Ecop4AORF6195P | |
| 6200 | R | Sso8033ORF3755P (100% identity) | Ecop4AORF6195P | |
| 6205 | 121 aa hypothetical protein | |||
| 9945 | phosphohydrolase | |||
| 9950 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Ecop4ADcmP |
| 9955 | V | V.SflC32DcmP (74% identity) | V.Ecop4ADcmP | |
| 9960 | drug/metabolite exporter YedA | |||
| 10815 | antitermination protein | |||
| 10820 | M | M2.EcosS3ORF2905P (100% identity) | M.Ecop4AORF10820P | |
| 10825 | R | R2.EcosS3ORF2905P (100% identity) | R1.Ecop4AORF10820P | |
| 10830 | R | R1.EcosS3ORF2905P (100% identity) | R2.Ecop4AORF10820P | |
| 10835 | TrmB family transcriptional regulator | |||
| 13755 | DUF3927 family protein | |||
| 13770 | M | M.EcosS9ORF10680P (100% identity) | A | M.Ecop4AORF13770P |
| 13775 | TrmB family transcriptional regulator | |||
| 16015 | helix-turn-helix transcriptional regulator | |||
| 16020 | M | M.KpnYN1ORFGP (89% identity) | M.Ecop4AORF16020P | |
| 16025 | 71 aa hypothetical protein | |||
| 21630 | McrC family protein | |||
| ??? | R | EcosS9ORF2810P (33% identity) | GGTCTC | Ecop4AORF21650AP |
| 21640 | IS3-like element ISEc52 family transposase | |||
| 21645 | R | EcoS1265ORF21320BP (100% identity) | GGTCTC | Ecop4AORF21650BP |
| 21650 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Ecop4AORF21650P |
| 21655 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.Ecop4AORF21650P |
| 21660 | helix-turn-helix domain-containing protein | |||
| 22935 | 555 aa hypothetical protein | |||
| 22940 | R | EcosS3ORF15775P (100% identity) | Ecop4AORF22945P | |
| 22945 | M | M.EcosS3ORF15775P (100% identity) | M.Ecop4AORF22945P | |
| 22950 | conjugal transfer protein TraG N-terminal | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21620 | glycosyltransferase family 2 protein | |||
| 21625 | R | EcosS3McrBP (100% identity) | Ecop4AMcrBP | |
| 21630 | R | EcosS9McrCP (100% identity) | Ecop4AMcrCP | |
| 21635 | Alw26I/Eco31I/Esp3I family type II restriction | |||