Escherichia coli PapRG-04-4 |
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Putative Escherichia coli PapRG-04-4 RM systems
Ref: Foster-Nyarko,E. et al. unpublished
REBASE ref # 30304
| Sequence length: | GenBank #: | |
| Chromosome: | 5,409,430 bp | CP049201 |
| plasmid pIncFIB: | 167,766 bp | CP049202 |
REBASE acronym: EcoRG044
Org_num: 40053
All begin G6Z99_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4240 | IS4 family transposase | |||
| 4245 | R | Eco3234AORF840P (98% identity) | EcoRG044ORF4250P | |
| 4250 | M | M.Ecos641ORF2625P (99% identity) | M.EcoRG044ORF4250P | |
| 4255 | S | S.Eco3234AORF840P (99% identity) | S.EcoRG044ORF4250P | |
| 4260 | DEAD/DEAH box helicase family protein | |||
| 6115 | IS1 family transposase | |||
| 6120 | R | EcoM9812ORF11290P (99% identity) | EcoRG044ORF6130P | |
| 6125 | S | S.EfeEF31ORF5230P (100% identity) | S.EcoRG044ORF6130P | |
| 6130 | M | M.EfeEF31ORF5230P (100% identity) | M.EcoRG044ORF6130P | |
| 6135 | transposase | |||
| 15330 | transcription factor | |||
| 15335 | M | M.EcosB2CORFEP (99% identity) | M.EcoRG044ORF15335P | |
| 15340 | S | S.Eal3449ORFCP (98% identity) | S.EcoRG044ORF15335P | |
| 15345 | DUF4433 domain-containing protein | |||
| 15350 | macro domain-containing protein | |||
| 15355 | R | EcoF16024ORF18990P (99% identity) | EcoRG044ORF15335P | |
| 15360 | M48 family metallopeptidase | |||
| 20635 | endoribonuclease SymE | |||
| ??? | S | S.EalTBGAORF19960P (65% identity) | S.EcoRG044ORF20645P | |
| 20645 | M | M.SflFF12ORF17265P (99% identity) | M.EcoRG044ORF20645P | |
| 20650 | R | Eco8SOC08ORF11210P (99% identity) | EcoRG044ORF20645P | |
| 20655 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1755 | cell division protein DamX | |||
| 1760 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoRG044DamP |
| 1765 | ribulose-phosphate 3-epimerase | |||
| 2285 | DUF2556 family protein | |||
| 2290 | M | M.EcoWS38ORF16505P (100% identity) | ATGCAT | M.EcoRG044ORF2290P |
| 2295 | DNA-binding transcriptional regulator Fis | |||
| 4270 | 5-nucleotidase | |||
| 4275 | R | Eco3234AORF760P (99% identity) | GAAC | EcoRG044ORF4275P |
| 4280 | integrase | |||
| 7645 | flagella biosynthesis regulator Flk | |||
| 7650 | M | M.EcoSCU152ORF7280P (100% identity) | M.EcoRG044ORF7650P | |
| 7655 | Com family DNA-binding transcriptional | |||
| 9735 | phosphohydrolase | |||
| 9740 | M | M.EcosEC29DcmP (100% identity) | CCWGG | M.EcoRG044DcmP |
| 9745 | V | V.SflFF64DcmP (100% identity) | V.EcoRG044DcmP | |
| 9750 | drug/metabolite exporter YedA | |||
| 11930 | 67 aa hypothetical protein | |||
| 11935 | M | M.Sso63633ORF22290P (99% identity) | M.EcoRG044ORF11935P | |
| 11940 | phage lysis protein EssD | |||
| 14025 | holin | |||
| 14035 | M | M.Eco11C16ORF8075P (98% identity) | M.EcoRG044ORF14035P | |
| 14040 | TrmB family transcriptional regulator | |||
| 20320 | tyrosine-type recombinase/integrase | |||
| 20325 | M | M.SenUA38ORF610P (100% identity) | M.EcoRG044ORF20325P | |
| 20330 | R | Sen2528ORF19500P (100% identity) | EcoRG044ORF20325P | |
| 20335 | 269 aa hypothetical protein | |||
| 20435 | 678 aa hypothetical protein | |||
| 20440 | R | Eco3592ORFJP (96% identity) | EcoRG044ORF20440P | |
| 20445 | HNH endonuclease | |||
| 22475 | PerC family transcriptional regulator | |||
| 22480 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoRG044ORF22480P |
| 22485 | LexA family transcriptional regulator | |||
| plasmid pIncFIB | ||||
| 26930 | 73 aa hypothetical protein | |||
| 26935 | M | M.EcoWY5172ORF23370P (100% identity) | M.EcoRG044ORF26935P | |
| 26940 | 102 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20650 | type I restriction-modification system | |||
| 20655 | R | Ssp28760MrrP (99% identity) | EcoRG044MrrP | |
| 20660 | GTPase | |||