Yokenella regensburgei NCTC11966 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Yokenella regensburgei NCTC11966 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 4,937,525 bp
GenBank #: UHJH00000000 (NZ_UHJH00000000)
REBASE acronym: Yre11966
Org_num: 42863
All begin NCTC11966_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 940 | Transposase | |||
| 941 | R | Yre11968IP (100% identity) | GCANNNNNNCTGG | Yre11966IP |
| 942 | Uncharacterized protein conserved in bacteria | |||
| 943 | S | S.Yre11968I (100% identity) | GCANNNNNNCTGG | S.Yre11966I |
| 944 | M | M.Yre11968I (100% identity) | GCANNNNNNCTGG | M.Yre11966I |
| 945 | Uncharacterised protein | |||
| 4152 | EcoKMrr | |||
| 4153 | M | M.Yre11968II (100% identity) | TGACNNNNNNGTC | M.Yre11966II |
| 4154 | S | S.Yre11968II (100% identity) | TGACNNNNNNGTC | S.Yre11966II |
| 4155 | R | Yre11968IIP (100% identity) | TGACNNNNNNGTC | Yre11966IIP |
| 4157 | Predicted membrane protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Yre11968ORF4799P (99% identity) | M.Yre11966ORF1P | |
| 3 | Uncharacterised protein | |||
| 5 | Bacteriophage replication gene A protein (GPA) | |||
| 6 | M | M.Yre11968ORF4796P (100% identity) | M1.Yre11966ORF6P | |
| 7 | Uncharacterised protein | |||
| 8 | Uncharacterised protein | |||
| 9 | M | M.Yre11968ORF4837P (100% identity) | M2.Yre11966ORF6P | |
| 10 | Uncharacterised protein | |||
| 48 | phage portal protein, PBSX family | |||
| 49 | M | M.Yre11968ORF4799P (100% identity) | M.Yre11966ORF49P | |
| 50 | Uncharacterised protein | |||
| 54 | Uncharacterised protein | |||
| 55 | M | M.Yre11968ORF4837P (100% identity) | M.Yre11966ORF55P | |
| 56 | Uncharacterised protein | |||
| 467 | cell division protein DamX | |||
| 468 | M | M.YreW13DamP (100% identity) | M.Yre11966DamP | |
| 469 | Ribulose-phosphate 3-epimerase | |||
| 1061 | Plasmid stability protein | |||
| ??? | M | M.Yre11968ORF3663P (100% identity) | M.Yre11966ORF1062P | |
| 1063 | R | Yre11968ORF3663P (100% identity) | Yre11966ORF1062P | |
| 1064 | Uncharacterised protein | |||
| 2036 | Uncharacterised protein | |||
| ??? | M | M.YreW13DcmP (100% identity) | M.Yre11966DcmP | |
| 2038 | V | V.Yre11968DcmP (100% identity) | V.Yre11966DcmP | |
| 2039 | Uncharacterized inner membrane transporter yedA | |||
| 4255 | ParB-like nuclease domain | |||
| 4256 | M | M.Yre11968III (100% identity) | TGGCCA | M.Yre11966III |
| 4257 | Prophage CP4-57 integrase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4151 | Uncharacterized protein conserved in bacteria | |||
| 4152 | R | Yre11968MrrP (100% identity) | Yre11966MrrP | |
| 4153 | Type I restriction enzyme EcoKI M protein | |||