Streptococcus hyointestinalis NCTC12224 |
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Putative Streptococcus hyointestinalis NCTC12224 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 2,553,358 bp
GenBank #: UHFN00000000 (NZ_UHFN00000000)
REBASE acronym: Shy12224
Org_num: 42644
All begin NCTC12224_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 271 | M | M.Shy12224I (69% identity) | M.Shy12224ORF271P | |
| 272 | S | S1.SeqSEZ13ORF1833P (100% identity) | S1.Shy12224ORF271P | |
| 273 | S | S3.Shy12224IP (100% identity) | S2.Shy12224ORF271P | |
| 274 | integrase/recombinase, phage integrase family | |||
| 275 | S | S1.Shy12224I (59% identity) | S3.Shy12224ORF271P | |
| 276 | Uncharacterised protein | |||
| 277 | Uncharacterised protein | |||
| ??? | R | Shy12224ORF152P (43% identity) | Shy12224ORF271P | |
| 84 | Uncharacterised protein | |||
| 85 | S | S.Sag8184ORF306P (26% identity) | S2.Shy12224ORF91P | |
| 86 | Integrase | |||
| 87 | R | SgaS1ORF4805P (91% identity) | Shy12224ORF91P | |
| 88 | ISSag3, transposase | |||
| 89 | S | S1.Sma5683ORF6410P (84% identity) | S1.Shy12224ORF91P | |
| 90 | type I restriction-modification system, | |||
| 91 | M | M.Shy12224ORF643P (46% identity) | M.Shy12224ORF91P | |
| 92 | transposase, IS116/IS110/IS902 family protein | |||
| 143 | ATP-dependent DNA helicase RecG | |||
| 144 | R | SagSA111ORF272P (99% identity) | GACNNNNNTARG | Shy12224IP |
| 145 | MTH538 TIR-like domain (DUF1863) | |||
| 146 | Uncharacterised protein | |||
| 147 | S | S2.Shy12224ORF271P (100% identity) | S3.Shy12224IP | |
| 148 | S | S2.SagSA111ORF272P (100% identity) | S2.Shy12224IP | |
| 149 | integrase/recombinase, phage integrase family | |||
| 150 | Uncharacterised protein | |||
| 151 | S | S3.Shy12224ORF271P (59% identity) | GACNNNNNTARG | S1.Shy12224I |
| 152 | M | M.SsuWTORFEP (98% identity) | GACNNNNNTARG | M.Shy12224I |
| 153 | transposase | |||
| 642 | transposase | |||
| 643 | M | M.SmaE37ORF5670P (95% identity) | M.Shy12224ORF643P | |
| 644 | type I restriction-modification system, | |||
| 645 | S | S.RbrL2ORF9000P (70% identity) | S1.Shy12224ORF643P | |
| 646 | type I restriction-modification system, | |||
| 647 | Integrase | |||
| 648 | S | S.Sma19ASORF650P (36% identity) | S2.Shy12224ORF643P | |
| 649 | drug/metabolite transporter permease | |||
| 645 | type IC specificity subunit | |||
| 646 | R | SgaS1ORF4805P (91% identity) | Shy12224ORF91P | |
| 647 | Integrase | |||
| 872 | membrane protein | |||
| ??? | R | SspHTS2ORFFP (55% identity) | Shy12224ORF875P | |
| 875 | M | M.Spa15912ORF10112P (74% identity) | M.Shy12224ORF875P | |
| 876 | S | S.SsuF001ORF8640P (45% identity) | S.Shy12224ORF875P | |
| 877 | Uncharacterised protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 336 | Uncharacterised protein | |||
| 337 | M | M.LlaKR2I (94% identity) | GATC | M.Shy12224ORF337P |
| 338 | R | SeqG6ORF285P (45% identity) | Shy12224ORF337AP | |
| 339 | ISSag3, transposase | |||
| 340 | R | LlaKR2I (42% identity) | Shy12224ORF337BP | |
| 341 | Uncharacterised protein | |||
| 436 | bifunctional | |||
| 437 | M | M.Smi575ORF619P (62% identity) | M.Shy12224ORF437P | |
| 438 | RM | SspHTS9ORFBP (57% identity) | Shy12224ORF437P | |
| 439 | conjugative transposon membrane | |||
| 220 | transposase | |||
| 221 | R | Sru404ORF5635P (68% identity) | GCATC | Shy12224IIP |
| 222 | Uncharacterised protein | |||
| 223 | M | M.Sru404ORF5635P (70% identity) | GCATC | M.Shy12224II |
| 224 | transcriptional regulator | |||
| 1440 | transposase | |||
| 1441 | M | M.Sco1050ORF805P (95% identity) | M.Shy12224ORF1441P | |
| 1442 | transposase | |||
| 1468 | relaxase | |||
| 1469 | M | M.Sco1050ORF828P (92% identity) | M.Shy12224ORF1469P | |
| 1470 | phage protein | |||
| 1630 | Uncharacterised protein | |||
| 1631 | RM | Sor1021ORF4850P (80% identity) | Shy12224ORF1631P | |
| 1632 | integrase | |||
| 2191 | phage protein | |||
| 2192 | M | M.Sco1050ORF828P (90% identity) | M.Shy12224ORF2192P | |
| 2193 | relaxase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2149 | Protein of uncharacterised function (DUF2829) | |||
| 2150 | R | Sps7493ORF4735P (55% identity) | Shy12224ORF2153P | |
| 2151 | Uncharacterised protein | |||
| 2152 | Uncharacterised protein | |||
| 2153 | M | M.FspXS5ORF14290P (31% identity) | M.Shy12224ORF2153P | |
| 2154 | multidrug resistance-like ATP-binding protein | |||