Helicobacter pylori NCTC13338 |
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Putative Helicobacter pylori NCTC13338 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 1,651,372 bp
GenBank #: UGHQ00000000 (NZ_UGHQ00000000)
REBASE acronym: Hpy13338
Org_num: 43571
All begin NCTC13338_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 639 | phosphatidic acid phosphatase | |||
| 640 | M | M.HpyNG06ORF4250P (95% identity) | M.Hpy13338ORF640P | |
| 641 | S | S.HpyNG17ORF4315P (45% identity) | S.Hpy13338ORF640P | |
| 642 | R | HpyNG06ORF4250P (97% identity) | Hpy13338ORF640P | |
| 643 | hydroxyethylthiazole kinase | |||
| 702 | CAAX protease | |||
| 703 | S | S.HpyKH40ORFMP (95% identity) | S.Hpy13338ORF703P | |
| 704 | outer membrane protein | |||
| 1059 | Uncharacterized protein conserved in bacteria | |||
| ??? | R | HpyU437ORF2115P (94% identity) | Hpy13338ORF1062P | |
| 1062 | M | M.HpyPR04IV (95% identity) | M.Hpy13338ORF1062P | |
| 1063 | S | S.HpyBT302ORFCP (98% identity) | S.Hpy13338ORF1062P | |
| 1065 | polyphosphate kinase | |||
| 1573 | metal-dependent hydrolase | |||
| ??? | R | Hpy13345ORF85P (60% identity) | Hpy13338ORF1576P | |
| ??? | M | M.HpyU421XIV (76% identity) | M.Hpy13338ORF1576P | |
| 1578 | S | S.HpySP501ORF7265P (93% identity) | S.Hpy13338ORF1576P | |
| 1579 | thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12 | cytoplasmic protein | |||
| 13 | RM | HpyL029ORF7350P (77% identity) | Hpy13338ORF13P | |
| 14 | CAAX protease | |||
| 28 | outer membrane protein (omp32) | |||
| ??? | R | HpyIR2IIIP (97% identity) | CCATC | Hpy13338IVP |
| 30 | M | M1.HpyID1III (99% identity) | CCATC | M1.Hpy13338IV |
| ??? | M | M1.HpyMT5135III (98% identity) | CCATC | M2.Hpy13338IV |
| 32 | Permease | |||
| 57 | HP1473-transformation associated protein | |||
| 58 | RM | HpyNG10ORF7135P (98% identity) | Hpy13338ORF58P | |
| 59 | type II restriction enzyme | |||
| 58 | type II restriction modification enzyme | |||
| 59 | S | S.Hpy2018ORF14081P (52% identity) | S1.Hpy13338ORF59P | |
| 60 | S | S.HpyNCI23ORFXP (93% identity) | S2.Hpy13338ORF59P | |
| 61 | DNA polymerase I | |||
| 146 | adenine-specific DNA methylase | |||
| 147 | M | M2.Hpyfe78ORF7125P (100% identity) | GAAGA | M1.Hpy13338VII |
| ??? | M | M1.HpyBR5VI (98% identity) | GAAGA | M2.Hpy13338VII |
| ??? | R | HpyISR3VIIP (63% identity) | GAAGA | Hpy13338VIIP |
| 149 | two-component regulator | |||
| 159 | nicotinate-nucleotide pyrophosphorylase | |||
| 160 | RM | HpySP506ORF6340P (70% identity) | Hpy13338ORF160P | |
| 161 | Type IIG restriction-modification enzyme | |||
| 306 | IceA2 protein | |||
| 307 | M | M.HpyOK317ORFEP (91% identity) | CATG | M.Hpy13338I |
| 308 | haloacid dehalogenase/epoxide hydrolase | |||
| 351 | carbon starvation protein A | |||
| 352 | R | HpyNG06VP (100% identity) | CTRYAG | Hpy13338VIP |
| 353 | M | M.HpyNG06V (100% identity) | CTRYAG | M.Hpy13338VI |
| 354 | outer membrane protein | |||
| 404 | negative regulator of flagellin synthesis FlgM | |||
| ??? | M | M.HpySWT10XIII (97% identity) | GCGC | M.Hpy13338ORF405P |
| 406 | Uncharacterised protein | |||
| 441 | Laminin subunit alpha-2 precursor | |||
| 442 | R | HpyNG06XIP (100% identity) | TCNNGA | Hpy13338XIIP |
| 443 | M | M.HpyPE108XI (98% identity) | TCNNGA | M.Hpy13338XII |
| 444 | biotin carboxylase | |||
| 582 | ATP-dependent DNA helicase | |||
| 583 | M | M.HpyU423IX (97% identity) | GTNNAC | M.Hpy13338X |
| 584 | R | HpyAL1VIP (91% identity) | GTNNAC | Hpy13338XP |
| 585 | flagellar hook protein FlgE | |||
| 850 | type II R-M system protein | |||
| 851 | RM | HpySP609ORF3245P (67% identity) | Hpy13338ORF851P | |
| 852 | type II R-M system protein | |||
| 1021 | metalloendopeptidase like protein | |||
| ??? | R | HpySP505XIP (86% identity) | GTAC | Hpy13338IXP |
| ??? | M | M.HpyGCT27ORF1545P (96% identity) | GTAC | M.Hpy13338IX |
| 1024 | DNA gyrase subunit B | |||
| 1040 | Catalase like protein | |||
| 1041 | M | M.HpySP207ORF2285P (92% identity) | M.Hpy13338ORF1041P | |
| 1042 | type II restriction endonuclease | |||
| 1041 | type II DNA modification enzyme | |||
| 1042 | R | HpyNG06ORF2420P (98% identity) | ACNGT | Hpy13338IIP |
| 1043 | M | M.HpySP407II (98% identity) | ACNGT | M.Hpy13338II |
| 1044 | GTP-binding protein | |||
| 1045 | adenine specific DNA methyltransferase | |||
| 1046 | M | M.HpyNG06II (99% identity) | ATTAAT | M.Hpy13338III |
| 1047 | outer membrane protein | |||
| 1191 | Uncharacterised protein | |||
| ??? | M | M.HpyNG06ORF1525P (99% identity) | M.Hpy13338ORF1192P | |
| 1194 | R | HpyNCI39IXP (86% identity) | Hpy13338ORF1192P | |
| 1195 | polysaccharide deacetylase | |||
| 1241 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 1242 | M | M.HpySWT12VI (37% identity) | M.Hpy13338ORF1242P | |
| 1243 | IS606 transposase | |||
| 1244 | IS606 transposase | |||
| 1245 | IS200 insertion sequence from SARA17 | |||
| 1246 | R | Hpy476A2ORFJP (83% identity) | Hpy13338ORF1242P | |
| 1247 | DNA methyltransferase | |||
| 1246 | type II DNA modification enzyme | |||
| 1247 | M | M.HpyLIM8IX (97% identity) | TCGA | M.Hpy13338XI |
| 1248 | exodeoxyribonuclease VII large subunit | |||
| 1409 | alpha-1,2-fucosyltransferase | |||
| 1410 | M | M.Hpy13207IX (98% identity) | GATC | M.Hpy13338VIII |
| ??? | R | HpyPO101VP (96% identity) | GATC | Hpy13338VIIIP |
| 1414 | malonyl CoA-acyl carrier protein transacylase | |||
| 1452 | SSS family proline:sodium (Na+) symporter | |||
| 1453 | R | HpySP11VIIP (92% identity) | CCTC | Hpy13338VP |
| 1454 | M | M2.HpyC002XII (97% identity) | CCTC | M2.Hpy13338VP |
| 1455 | M | M1.HpyNG06IV (99% identity) | CCTC | M1.Hpy13338V |
| 1456 | Agmatine deiminase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyID1ORF7305P (97% identity) | M.Hpy13338ORF8P | |
| 10 | R | HpyU104ORF6695P (96% identity) | Hpy13338ORF8P | |
| 11 | cytoplasmic protein | |||
| 130 | biotin synthase | |||
| 131 | R | HpyNG06ORF6725P (85% identity) | Hpy13338ORF132P | |
| 132 | M | M.HpyMT5111ORF7515P (95% identity) | M.Hpy13338ORF132P | |
| 133 | endonuclease | |||
| 143 | rod shape-determining MreC family protein | |||
| 144 | R | HpyS300ORF2305P (94% identity) | Hpy13338ORF145P | |
| ??? | M | M.HpyU105ORF7550P (95% identity) | M.Hpy13338ORF145P | |
| 147 | modification methylase mjai | |||