Helicobacter fennelliae NCTC13102 |
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Putative Helicobacter fennelliae NCTC13102 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 2,276,846 bp
GenBank #: UAWL00000000 (NZ_UAWL00000000)
REBASE acronym: Hfe13102
Org_num: 43564
All begin NCTC13102_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 999 | cation diffusion facilitator family transporter | |||
| 1000 | S | S2.Hfe13101ORF977P (62% identity) | CTAYNNNNNNNRTG | S.Hfe13102V |
| 1001 | CAAX protease | |||
| 1002 | M | M.CupORF1006P (97% identity) | CTAYNNNNNNNRTG | M.Hfe13102V |
| 1003 | R | Cup12264ORF1355P (96% identity) | CTAYNNNNNNNRTG | Hfe13102VP |
| 1004 | type I restriction-modification enzyme | |||
| 1006 | Uncharacterised protein | |||
| 1007 | S | S.Hbi43879ORF943P (66% identity) | GACNNNNNTAAA | S.Hfe13102IV |
| 1008 | M | M.HciORF2281P (98% identity) | GACNNNNNTAAA | M.Hfe13102IV |
| 1009 | DNA-binding transcriptional dual regulator Crp | |||
| 1992 | saccharopine dehydrogenase | |||
| 1993 | M | M.Hfe13101ORF1998P (99% identity) | M.Hfe13102ORF1993P | |
| 1994 | S | S.Hap1501ORF4715P (46% identity) | S.Hfe13102ORF1993P | |
| 1995 | thiamine biosynthesis protein (thi) | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 121 | oxidoreductase, aldo/keto reductase family | |||
| 122 | M | M.Hfe50ORF2137P (99% identity) | M.Hfe13102ORF122P | |
| 123 | AlwI restriction endonuclease family protein | |||
| 122 | Adenine-specific methyltransferase | |||
| 123 | R | Hfe11613IP (99% identity) | Hfe13102ORF123P | |
| 124 | type II methylase | |||
| 123 | AlwI restriction endonuclease family protein | |||
| ??? | M | M.Hfe50ORF2139P (99% identity) | M.Hfe13102ORF124P | |
| 126 | nodulation protein L | |||
| 137 | NADP-dependent L-serine/L-allo-threonine | |||
| 138 | R | Hfe13101VP (100% identity) | GGATG | Hfe13102IP |
| 139 | M | M.Hfe50ORF2159P (99% identity) | GGATG | M1.Hfe13102I |
| 140 | M | M.Hfe50ORF2160P (99% identity) | GGATG | M2.Hfe13102I |
| 141 | Uncharacterised protein | |||
| 142 | Phosphoglycolate phosphatase | |||
| 143 | M | M.Hfe13101ORF112P (100% identity) | M.Hfe13102ORF143P | |
| ??? | R | Hfe50ORF2164P (98% identity) | Hfe13102ORF143P | |
| 146 | SAM-dependent methyltransferase | |||
| 413 | methyltransferase | |||
| 414 | R | Cup11840VIP (95% identity) | Hfe13102ORF414P | |
| 415 | Methyl-directed repair DNA adenine methylase | |||
| 414 | type II restriction endonuclease | |||
| 415 | M | M.Hsp1616ORF1245P (72% identity) | GGCC | M.Hfe13102III |
| 416 | R | Hmu12714ORF1118P (81% identity) | GGCC | Hfe13102IIIP |
| 417 | Type II adenine specific DNA methyltransferase | |||
| 416 | Uncharacterised protein | |||
| ??? | M | M.Hfe50ORF1845P (96% identity) | M.Hfe13102ORF417P | |
| 419 | Uncharacterised protein | |||
| 598 | Uncharacterised protein | |||
| 599 | M | M.Hfe50ORF1632P (100% identity) | M.Hfe13102ORF599P | |
| 600 | Uncharacterised protein | |||
| 763 | GMP synthase | |||
| 764 | M | M.Hfe13101III (99% identity) | M.Hfe13102ORF764P | |
| 765 | R | Hfe13101IIIP (84% identity) | Hfe13102ORF764P | |
| ??? | site-specific DNA-methyltransferase | |||
| 765 | type II restriction endonuclease TdeIII | |||
| ??? | M | M.Hfe13101ORF1239P (99% identity) | M.Hfe13102ORF766P | |
| 767 | acyltransferase | |||
| 824 | methyl-accepting chemotaxis protein | |||
| 825 | M | M.Hfe13101VII (99% identity) | M.Hfe13102ORF825P | |
| 826 | R | Hci629ORFEP (98% identity) | Hfe13102ORF825P | |
| 827 | Uncharacterised protein | |||
| 1053 | Uncharacterised protein | |||
| ??? | M | M.Hma5501ORF389P (78% identity) | M.Hfe13102ORF1054P | |
| ??? | R | Hma5501ORF389P (91% identity) | Hfe13102ORF1054P | |
| 1057 | Uncharacterised protein | |||
| 1854 | Uncharacterised protein | |||
| 1855 | M | M.Hfe50ORF1575P (100% identity) | M.Hfe13102ORF1855P | |
| 1856 | Uncharacterised protein | |||
| 1866 | Protein involved in cell division | |||
| 1867 | M | M.Hfe13101IV (99% identity) | GTNNAC | M.Hfe13102II |
| 1868 | R | Hfe13101IVP (100% identity) | GTNNAC | Hfe13102IIP |
| 1869 | phage-related CUP0950-like protein | |||
| 1929 | Glutamate synthase [NADPH] small chain | |||
| 1930 | R | Hfe13101IIP (82% identity) | Hfe13102ORF1931P | |
| 1931 | M | M.Hfe50ORF927P (99% identity) | M.Hfe13102ORF1931P | |
| 1932 | Type II restriction enzyme M protein | |||
| 1973 | Uncharacterized protein conserved in archaea | |||
| 1974 | RM | Hfe50ORF975P (29% identity) | Hfe13102ORF1974CP | |
| 1975 | RM | Hfe50ORF975P (35% identity) | Hfe13102ORF1974BP | |
| 1976 | RM | Hfe11613ORF673AP (99% identity) | Hfe13102ORF1974AP | |
| 1977 | Integral membrane protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1241 | Uncharacterised protein | |||
| 1242 | M | M.Hfe13102ORF1258P (34% identity) | M.Hfe13102ORF1242P | |
| 1243 | Uncharacterised protein | |||
| 1256 | Uncharacterised protein | |||
| 1257 | R | Hfe50ORF2430P (97% identity) | Hfe13102ORF1258P | |
| 1258 | M | M.Hfe13101ORF719P (98% identity) | M.Hfe13102ORF1258P | |
| 1259 | Uncharacterised protein | |||
| 1623 | Oleate hydratase | |||
| 1624 | R | Hfe13101ORF1625P (100% identity) | Hfe13102ORF1625P | |
| 1625 | M | M.Hfe13101ORF1625P (96% identity) | M.Hfe13102ORF1625P | |
| 1626 | 4-oxalocrotonate tautomerase enzyme family | |||
| 1784 | Uncharacterized conserved protein | |||
| 1785 | M | M.Hfe13101ORF1787P (98% identity) | M.Hfe13102ORF1785P | |
| 1786 | Predicted transcriptional regulator | |||