Helicobacter cinaedi NCTC12219 |
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Putative Helicobacter cinaedi NCTC12219 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 1,897,133 bp
GenBank #: UGHX00000000 (NZ_UGHX00000000)
REBASE acronym: Hci12219
Org_num: 43560
All begin NCTC12219_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 46 | saccharopine dehydrogenase | |||
| 47 | M | M.Hsp5293ORF7770P (79% identity) | M.Hci12219ORF47P | |
| 48 | S | S1.Hwi170ORF7345P (96% identity) | S1.Hci12219ORF47P | |
| 49 | S | S.Ast1078ORFAP (18% identity) | S2.Hci12219ORF47P | |
| 50 | DGQHR domain | |||
| 1690 | cell division inhibitor | |||
| 1691 | S | S2.Hwi488ORF7215P (62% identity) | TAAGNNNNNTAC | S2.Hci12219II |
| 1692 | argininosuccinate synthase | |||
| 1693 | SMR family multidrug efflux pump | |||
| 1694 | SMR family multidrug efflux pump | |||
| 1695 | cation diffusion facilitator family transporter | |||
| 1696 | R | Hwi2049ORF6930P (98% identity) | TAAGNNNNNTAC | Hci12219IIP |
| 1697 | Uncharacterized phage-associated protein | |||
| 1698 | Uncharacterised protein | |||
| 1699 | S | S.Hwi435ORF7025P (58% identity) | S1.Hci12219IIP | |
| 1700 | Plasmid stabilisation system protein | |||
| 1701 | addiction module antitoxin, RelB/DinJ family | |||
| 1702 | Uncharacterised protein | |||
| 1703 | M | M.HbiMUORF3535P (98% identity) | TAAGNNNNNTAC | M.Hci12219II |
| 1704 | DNA-binding transcriptional dual regulator Crp | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 256 | alanyl-tRNA synthetase | |||
| 257 | RM | Che51209ORF1555P (61% identity) | Hci12219ORF257P | |
| 258 | S | Hci94105ORF1452P (14% identity) | S.Hci12219ORF257P | |
| 259 | Mec-2 family protein | |||
| 275 | membrane protein | |||
| 276 | RM | Hsp1616ORF8480P (79% identity) | Hci12219ORF276P | |
| 277 | aspartyl/glutamyl-tRNA amidotransferase subunit | |||
| 964 | RDD family protein | |||
| 965 | M | M.Hci12221II (97% identity) | GANTC | M.Hci12219I |
| 966 | McrBC 5-methylcytosine restriction system | |||
| 1274 | Uncharacterised protein | |||
| ??? | M | M.Hci12221IV (97% identity) | M.Hci12219ORF1275P | |
| 1277 | Uncharacterised protein | |||
| 1365 | dihydroxy-acid dehydratase | |||
| ??? | M | M.Cup6824ORF7960P (96% identity) | M.Hci12219ORF1366P | |
| 1367 | R | Hwi2049ORF1580P (96% identity) | Hci12219ORF1366P | |
| 1368 | type II R-M system DNA modification enzyme | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12 | NADP-dependent alcohol dehydrogenase | |||
| 13 | M | M.HbiMUORF9020P (69% identity) | M.Hci12219ORF13P | |
| 14 | R | HbiMUORF3930P (98% identity) | Hci12219ORF13P | |
| 15 | permease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 965 | adenine-specific DNA methylase | |||
| 966 | R | HciT36McrCP (76% identity) | Hci12219McrCP | |
| 967 | R | Hca12410McrBP (37% identity) | Hci12219McrBP | |
| 968 | amino acid ABC transporter permease protein | |||