Helicobacter canis NCTC12410 |
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Putative Helicobacter canis NCTC12410 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 2,237,085 bp
GenBank #: UGHV00000000 (NZ_UGHV00000000)
REBASE acronym: Hca12410
Org_num: 43559
All begin NCTC12410_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 127 | malonyl CoA-acyl carrier protein transacylase | |||
| 128 | R | Hsp5293ORF3950P (54% identity) | Hca12410ORF129P | |
| 129 | M | M.Hsp5293ORF3950P (61% identity) | M.Hca12410ORF129P | |
| 130 | S | Hca12410ORF132P (7% identity) | S.Hca12410ORF129P | |
| 131 | cysteine synthase | |||
| 238 | type I restriction-modification system, M | |||
| ??? | M | M.Cup12264ORF75P (78% identity) | M.Hca12410ORF239P | |
| 240 | R | Cup3940ORF1574P (91% identity) | Hca12410ORF239P | |
| 241 | Uncharacterised protein | |||
| 242 | Uncharacterised protein | |||
| 243 | Toxin RelE | |||
| 244 | S | S.Cup14913ORF1616P (62% identity) | S.Hca12410ORF239P | |
| 245 | Uncharacterised protein | |||
| 946 | Uncharacterized protein conserved in bacteria | |||
| 947 | S | S.Cup3940ORF297P (56% identity) | S.Hca12410ORF950P | |
| 948 | Uncharacterised protein | |||
| 949 | Uncharacterised protein | |||
| 950 | M | M.Cup3940ORF297P (97% identity) | M.Hca12410ORF950P | |
| 951 | R | Cup3940ORF297P (97% identity) | Hca12410ORF950P | |
| 952 | glycyl-tRNA synthetase subunit alpha | |||
| 1763 | Uncharacterized protein conserved in bacteria, | |||
| 1764 | M | M.HbiMUORF255P (92% identity) | M.Hca12410ORF1764P | |
| 1765 | Fic family protein | |||
| 1766 | S | S.Asp3624ORF3130P (18% identity) | S.Hca12410ORF1764P | |
| 1767 | dihydroxy-acid dehydratase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 131 | cysteine synthase | |||
| 132 | RM | Cin12927SORF1529P (47% identity) | Hca12410ORF132P | |
| 133 | NADP-dependent alcohol dehydrogenase | |||
| 279 | Inner membrane transport protein YeaN | |||
| 280 | R | HciP01DORFXP (95% identity) | Hca12410ORF281P | |
| 281 | M | M.HciP01DORFXP (61% identity) | M.Hca12410ORF281P | |
| 282 | Uncharacterised protein | |||
| 361 | alkanesulfonate monooxygenase | |||
| 362 | M | M.HmuST1ORF4235P (57% identity) | M.Hca12410ORF362P | |
| 363 | AlwI restriction endonuclease family protein | |||
| 362 | type II methylase | |||
| 363 | R | HhiYS1ORFQP (53% identity) | Hca12410ORF364P | |
| 364 | M | M1.Htr114ORF8200P (50% identity) | M.Hca12410ORF364P | |
| 365 | shikimate kinase | |||
| 426 | Uncharacterised protein | |||
| 427 | RM | Hci12221ORF380P (74% identity) | Hca12410ORF427P | |
| 428 | GtrA family protein | |||
| 507 | flagellar assembly protein FliW | |||
| 508 | R | Cup6824ORF5895P (84% identity) | Hca12410ORF509P | |
| 509 | M | M.Cup6824ORF5895P (92% identity) | M.Hca12410ORF509P | |
| 510 | oxidoreductase | |||
| 746 | Uncharacterised protein | |||
| 747 | R | Hwi435ORF6305P (100% identity) | Hca12410ORF748P | |
| 748 | M | M.Hwi435ORF6305P (100% identity) | M.Hca12410ORF748P | |
| 749 | Uncharacterised protein | |||
| 765 | adenylosuccinate lyase | |||
| 766 | M | M2.Cup197059ORF1148P (96% identity) | M.Hca12410ORF766P | |
| ??? | R | Hwi488ORF685P (93% identity) | Hca12410ORF766P | |
| 769 | Uncharacterised protein | |||
| 1013 | M | M.Hbi43879ORF1243P (92% identity) | CCGG | M.Hca12410II |
| 1014 | HNH endonuclease domain-containing protein | |||
| 1060 | Uncharacterised protein | |||
| 1061 | M | M.Hbi43879ORF664P (92% identity) | GTNNAC | M.Hca12410III |
| ??? | R | Hbi43879ORF664P (66% identity) | GTNNAC | Hca12410IIIP |
| 1064 | GMP synthase | |||
| 1378 | Uncharacterised protein | |||
| 1379 | RM | HbiMUORF7335P (75% identity) | Hca12410ORF1379P | |
| 1380 | phosphoribosylformylglycinamidine synthase | |||
| 1415 | Uncharacterised protein | |||
| 1416 | RM | Hca1463ORFQP (50% identity) | Hca12410ORF1416P | |
| 1417 | Uncharacterised protein | |||
| 1430 | Uncharacterised protein | |||
| 1431 | M | M.SspP129ORF1047P (32% identity) | M.Hca12410ORF1431P | |
| 1500 | 30S ribosomal protein S15 | |||
| 1501 | M | M1.Hwi435ORF1540P (94% identity) | CCTC | M1.Hca12410I |
| 1502 | M | M2.Hwi435ORF1540P (96% identity) | CCTC | M2.Hca12410IP |
| 1503 | R | Hwi7711ORF1530P (88% identity) | CCTC | Hca12410IP |
| 1504 | alpha-1,3-fucosyltransferase | |||
| 1507 | excinuclease ABC subunit C | |||
| ??? | RM | Hci94105ORF885P (64% identity) | Hca12410ORF1508P | |
| 1509 | arginyl-tRNA-protein transferase | |||
| 1723 | D-lactate dehydrogenase | |||
| 1724 | RM | Hca1463ORFMP (55% identity) | Hca12410ORF1724AP | |
| 1725 | nuclease | |||
| 1726 | RM | Hwi7711ORF265P (16% identity) | Hca12410ORF1724BP | |
| 1727 | Uncharacterised protein | |||
| 1794 | Uncharacterized conserved protein | |||
| ??? | M | M.Cup6824ORF3270P (84% identity) | M.Hca12410ORF1795P | |
| 1797 | glutamine ABC transporter permease protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 698 | saccharopine dehydrogenase | |||
| 699 | M | M.Hbi43879ORF1879P (70% identity) | M.Hca12410ORF699P | |
| 700 | ATPase | |||
| 701 | DNA binding protein | |||
| 702 | R | HbiMUORF4545P (92% identity) | Hca12410ORF699P | |
| 703 | type III restriction enzyme R protein | |||
| 702 | type III restriction enzyme R protein | |||
| 703 | R | Cup6824ORF2315P (96% identity) | Hca12410ORF704P | |
| ??? | M | M.Cup14ORFAP (99% identity) | M.Hca12410ORF704P | |
| 706 | SMR family multidrug efflux pump | |||
| 1546 | glycosyltransferase | |||
| 1547 | M | M.HciT36ORF1398P (71% identity) | M.Hca12410ORF1547P | |
| 1548 | Uncharacterised protein | |||
| 1549 | R | Hca1463ORFBP (90% identity) | Hca12410ORF1547P | |
| 1550 | SAM-dependent methyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1518 | tRNA (uracil-5)-methyltransferase | |||
| 1519 | R | HciT36McrCP (57% identity) | Hca12410McrCP | |
| 1520 | R | Hci12219McrBP (37% identity) | Hca12410McrBP | |
| 1521 | transaldolase | |||