Helicobacter acinonychis NCTC12686 |
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Putative Helicobacter acinonychis NCTC12686 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 1,580,878 bp
GenBank #: UGIA00000000 (NZ_UGIA00000000)
REBASE acronym: Hac12686
Org_num: 43557
All begin NCTC12686_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 772 | Uncharacterized protein conserved in bacteria | |||
| ??? | R | Hac2129ORFXP (89% identity) | Hac12686ORF776P | |
| 776 | M | M.Hac2129ORFXP (98% identity) | M.Hac12686ORF776P | |
| ??? | S | S.HacSORF1111P (100% identity) | S.Hac12686ORF776P | |
| 780 | polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 43 | HrgA protein fragment 2 | |||
| 44 | M | M.HacSORF1512P (96% identity) | GATC | M.Hac12686VII |
| 45 | alpha-1,2-fucosyltransferase | |||
| 181 | exodeoxyribonuclease VII large subunit | |||
| 182 | M | M.HacSORF1348P (98% identity) | TCGA | M.Hac12686VIII |
| 183 | Uncharacterised protein | |||
| 193 | tautomerase | |||
| 194 | RM | HacSORF1335P (99% identity) | Hac12686ORF194P | |
| 195 | integrase | |||
| 233 | ATP-dependent DNA helicase | |||
| 234 | M | M.HacSORF1296P (97% identity) | GTNNAC | M.Hac12686X |
| 235 | R | Hac2129ORFGP (100% identity) | GTNNAC | Hac12686XP |
| 236 | flagellar hook protein FlgE | |||
| 268 | UDP-4-keto-6-deoxy-N-acetylglucosamine | |||
| 269 | R | HacSORF520P (95% identity) | CCGG | Hac12686IIP |
| 270 | M | M.HacSORF520P (100% identity) | CCGG | M.Hac12686II |
| 271 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 335 | anti-sigma-28 factor, FlgM family protein | |||
| 336 | M | M.HacSORF595P (100% identity) | M.Hac12686ORF336P | |
| 337 | Uncharacterised protein | |||
| 522 | DNA gyrase subunit B | |||
| ??? | M | M.Hac2129ORFA1P (100% identity) | GTAC | M.Hac12686IX |
| ??? | R | Hac2129ORFA1P (74% identity) | GTAC | Hac12686IXP |
| 526 | outer membrane protein 8 | |||
| 646 | Uncharacterised protein | |||
| 647 | M | M.HacSORF966P (100% identity) | M.Hac12686ORF647P | |
| 648 | GTP-binding protein LepA | |||
| 684 | Uncharacterised protein | |||
| 685 | M | M.HacSORF1016P (100% identity) | CTNAG | M.Hac12686VI |
| 686 | R | HacSORF1016P (100% identity) | CTNAG | Hac12686VIP |
| 687 | polysaccharide deacetylase | |||
| 740 | GTP-binding protein | |||
| 741 | site-specific type II DNA methyltransferase | |||
| 740 | GTP-binding protein | |||
| 741 | M | M.HacSORF1075P (100% identity) | ACNGT | M.Hac12686V |
| 742 | Queuosine biosynthesis protein | |||
| 869 | Uncharacterised protein | |||
| 870 | M | M.HacSORF1213P (100% identity) | M.Hac12686ORF870P | |
| ??? | R | HacSORF1213P (99% identity) | Hac12686ORF870P | |
| 872 | phosphatidic acid phosphatase | |||
| 919 | deoxycytidine triphosphate deaminase | |||
| 920 | M | M.HacSORF494P (100% identity) | TCNNGA | M.Hac12686IV |
| 921 | R | HacSORF494P (100% identity) | TCNNGA | Hac12686IVP |
| 922 | 16S ribosomal RNA methyltransferase RsmE | |||
| 1046 | pseudaminic acid synthase | |||
| 1047 | R | R2.Hpyfe49ORF6405P (86% identity) | R1.Hac12686ORF1050P | |
| ??? | R | R1.HacSORF360P (94% identity) | R2.Hac12686ORF1050P | |
| 1050 | M | M.Hac2129ORFSP (56% identity) | M.Hac12686ORF1050P | |
| 1051 | elongation factor P | |||
| 1123 | Uncharacterised protein | |||
| 1124 | M | M.HacSORF283P (100% identity) | M.Hac12686ORF1124P | |
| 1125 | DNA-binding/iron metalloprotein/AP | |||
| 1197 | Pantothenate kinase (type III) | |||
| ??? | RM | HacSORF201P (92% identity) | Hac12686ORF1198P | |
| 1200 | nicotinate-nucleotide pyrophosphorylase | |||
| 1210 | two-component regulator | |||
| ??? | R | HacSORF185P (91% identity) | GAAGA | Hac12686IIIP |
| ??? | M | M1.Hac2129ORFPP (47% identity) | GAAGA | M1.Hac12686III |
| 1214 | M | M1.HacSORF185P (100% identity) | GAAGA | M2.Hac12686III |
| 1215 | restriction enzyme fragment 2 | |||
| 1296 | outer membrane protein (omp32) | |||
| ??? | M | M2.HacSORF85P (95% identity) | M1.Hac12686ORF1297P | |
| ??? | M | M1.HacSORF85P (88% identity) | M2.Hac12686ORF1297P | |
| 1303 | Agmatine deiminase | |||
| 1372 | Uncharacterised protein | |||
| 1373 | RM | HacSORF9P (99% identity) | Hac12686ORF1373P | |
| 1374 | type III restriction enzyme | |||
| 1388 | biotin synthetase fragment | |||
| 1390 | R | Hac2129ORFKP (100% identity) | TGCA | Hac12686XIP |
| 1391 | M | M.HacSORF1782P (99% identity) | TGCA | M.Hac12686XI |
| 1392 | Uncharacterised protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 121 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||
| ??? | R | HacSORF1417P (98% identity) | Hac12686ORF124P | |
| ??? | M | M.HacSORF1417P (98% identity) | M.Hac12686ORF124P | |
| 125 | Uncharacterised protein | |||
| 433 | outer membrane protein HofD | |||
| ??? | M | M.Hac2129ORFTP (90% identity) | M.Hac12686ORF434P | |
| 437 | R | Hac2129ORFTP (99% identity) | Hac12686ORF434P | |
| 438 | SAM-dependent methyltransferase | |||
| 1373 | type IIS restriction-modification protein | |||
| 1374 | R | HacSORF7P (99% identity) | Hac12686ORF1375P | |
| ??? | M | M.HacSORF7P (100% identity) | M.Hac12686ORF1375P | |
| 1377 | ATP-dependent DNA helicase | |||
| 1443 | motility protein | |||
| 1444 | M | M.HacSORF1720P (99% identity) | M.Hac12686ORF1444P | |
| 1445 | R | HacSORF1720P (99% identity) | Hac12686ORF1444P | |
| 1446 | DNA polymerase I | |||