Escherichia coli NCTC9855 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli NCTC9855 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,501,925 bp
GenBank #: UGBS00000000 (NZ_UGBS00000000)
REBASE acronym: EcoC9855
Org_num: 43868
All begin NCTC9855_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4529 | restriction methylase | |||
| 4530 | M | M.SflN110ORF19045P (100% identity) | CCANNNNNNNTGAA | M.EcoC9855I |
| 4531 | S | S.EcoS7380ORFEP (100% identity) | CCANNNNNNNTGAA | S.EcoC9855I |
| 4532 | R | EcoS7005ORFFP (100% identity) | CCANNNNNNNTGAA | EcoC9855IP |
| 4533 | restriction methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5352 | cytoplasmic protein | |||
| 5353 | M | M.Ecos671ORFIP (100% identity) | M.EcoC9855ORF5353P | |
| 5354 | YfdA | |||
| 5554 | glutaminyl-tRNA synthetase | |||
| 5555 | M | M.EcoF374ORF52420P (99% identity) | M.EcoC9855ORF5555P | |
| 5556 | Uncharacterised protein | |||
| 357 | DamX protein | |||
| 358 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC9855DamP |
| 359 | ribulose-phosphate 3-epimerase | |||
| 470 | membrane protein | |||
| 471 | M | M.EcoS7380ORFAP (100% identity) | ATGCAT | M.EcoC9855ORF471P |
| 472 | phage integrase family site specific | |||
| 1844 | Uncharacterised protein | |||
| 1845 | M | M.EcoSO40ORF23900P (100% identity) | M.EcoC9855ORF1845P | |
| 1846 | replication protein for prophage | |||
| 1983 | recombination protein ninB from phage origin | |||
| 1984 | M | M.EcoS7380ORFIP (94% identity) | GATC | M.EcoC9855ORF1984P |
| 1985 | NinE protein | |||
| 2125 | phosphohydrolase | |||
| ??? | M | M.EcoS7380DcmP (99% identity) | CCWGG | M.EcoC9855DcmP |
| 2127 | DMT superfamily transporter inner | |||
| 2293 | lipoprotein | |||
| 2294 | M | M.Ecod58ORF7600P (99% identity) | A | M.EcoC9855ORF2294P |
| 2299 | YjhS | |||
| 3279 | phage protein | |||
| 3284 | M | M.EcoDEC12EORF951P (100% identity) | M.EcoC9855ORF3284P | |
| 3285 | lipoprotein | |||
| 3555 | NinF protein | |||
| 3556 | M | M.EcoS7380ORFIP (94% identity) | GATC | M.EcoC9855ORF3556P |
| 3557 | recombination protein ninB from phage origin | |||
| 3833 | LexA repressor | |||
| 3834 | M | M.EcoSO40ORF27175P (99% identity) | GATC | M.EcoC9855ORF3834P |
| 3835 | CPS-53 (KpLE1) prophage protein | |||
| 4148 | LexA repressor | |||
| 4149 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.EcoC9855ORF4149P |
| 4150 | CPS-53 (KpLE1) prophage protein | |||
| 4525 | YjhS protein | |||
| 4526 | R | SflSTLE4ORF19250P (100% identity) | EcoC9855ORF4526P | |
| 4527 | McrC family protein, McrBC 5-methylcytosine | |||
| 4922 | Crossover junction | |||
| 4923 | M | M.EcoS6685ORFOP (100% identity) | GATC | M.EcoC9855ORF4923P |
| 4924 | ybl78 | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4526 | restriction endonuclease | |||
| 4527 | R | SflSTLE4McrCP (100% identity) | EcoC9855McrCP | |
| 4528 | R | SflSTLE4McrBP (90% identity) | EcoC9855McrBP | |
| 4529 | restriction methylase | |||