Escherichia coli NCTC9708 |
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Putative Escherichia coli NCTC9708 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,571,319 bp
GenBank #: UGAF00000000 (NZ_UGAF00000000)
REBASE acronym: EcoC9708
Org_num: 43863
All begin NCTC9708_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4630 | restriction methylase | |||
| 4631 | R | EcoS7005ORFFP (100% identity) | CCANNNNNNNNTGAA | EcoC9708IP |
| 4632 | S | S.EcoO111ORFAP (100% identity) | CCANNNNNNNNTGAA | S.EcoC9708I |
| 4633 | M | M.SflN110ORF19045P (100% identity) | CCANNNNNNNNTGAA | M.EcoC9708I |
| 4634 | restriction methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 213 | cytoplasmic protein | |||
| 214 | M | M.SenBR027ORFEP (99% identity) | M.EcoC9708ORF214P | |
| 215 | YfdA | |||
| 693 | DamX protein | |||
| 694 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC9708DamP |
| 695 | ribulose-phosphate 3-epimerase | |||
| 810 | membrane protein | |||
| 811 | M | M.EcoS7380ORFAP (100% identity) | ATGCAT | M.EcoC9708ORF811P |
| 812 | DNA-binding protein Fis | |||
| 2229 | lipoprotein | |||
| 2230 | M | M.Ecod58ORF7600P (99% identity) | A | M.EcoC9708ORF2230P |
| 2235 | YjhS | |||
| 2328 | Uncharacterised protein | |||
| 2329 | M | M.EcoSO40ORF23900P (99% identity) | M.EcoC9708ORF2329P | |
| 2330 | replication protein for prophage | |||
| 2512 | lipoprotein | |||
| 2513 | M | M.EcoS7005ORFLP (100% identity) | M.EcoC9708ORF2513P | |
| 2518 | YjhS | |||
| 2573 | phosphohydrolase | |||
| 2574 | M | M.EcoS7380DcmP (99% identity) | CCWGG | M.EcoC9708DcmP |
| 2575 | V | V.SflFF59DcmP (100% identity) | V.EcoC9708DcmP | |
| 2576 | DMT superfamily transporter inner | |||
| 2745 | lipoprotein | |||
| 2746 | M | M.EcoC9708ORF2230P (32% identity) | M1.EcoC9708ORF2746P | |
| 2747 | M | M.Sfl9783ORF191P (54% identity) | M2.EcoC9708ORF2746P | |
| 2752 | YjhS | |||
| 3062 | Uncharacterised protein | |||
| ??? | M | M.EcoSJ7ORF2490P (100% identity) | M.EcoC9708ORF3063P | |
| 3064 | phage related protein | |||
| 3218 | lipoprotein | |||
| 3219 | M | M.EcoF736ORF22975P (99% identity) | M.EcoC9708ORF3219P | |
| 3223 | phage holin | |||
| 3967 | phage protein | |||
| 3972 | M | M.EcoDEC12EORF951P (100% identity) | M.EcoC9708ORF3972P | |
| 3973 | lipoprotein | |||
| 4264 | Crossover junction | |||
| 4265 | M | M.EcoS6685ORFOP (100% identity) | GATC | M.EcoC9708ORF4265P |
| 4266 | phage O protein family | |||
| 4636 | McrC family protein, McrBC 5-methylcytosine | |||
| 4637 | R | SflSTLE4ORF19250P (100% identity) | EcoC9708ORF4637P | |
| 4638 | YjhS protein | |||
| 5026 | Protein of uncharacterised function (DUF499) | |||
| ??? | M | M.Ecos195ORF4155P (96% identity) | M.EcoC9708ORF5027P | |
| 5033 | ATP-binding protein | |||
| 5333 | CPS-53 (KpLE1) prophage protein | |||
| 5334 | M | M.EcoSO40ORF27175P (100% identity) | GATC | M.EcoC9708ORF5334P |
| 5335 | LexA repressor | |||
| 5632 | recombination protein ninB from phage origin | |||
| 5633 | M | M.EcoS7380ORFIP (94% identity) | GATC | M.EcoC9708ORF5633P |
| 5634 | NinF protein | |||
| 5706 | Crossover junction | |||
| 5707 | M | M.EcoC7ORF23570P (99% identity) | GATC | M.EcoC9708ORF5707P |
| 5708 | CPS-53 (KpLE1) prophage protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4634 | restriction methylase | |||
| 4635 | R | SflSTLE4McrBP (100% identity) | EcoC9708McrBP | |
| 4636 | R | SflSTLE4McrCP (100% identity) | EcoC9708McrCP | |
| 4637 | restriction endonuclease | |||