Escherichia coli NCTC9434 |
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Putative Escherichia coli NCTC9434 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,199,505 bp
GenBank #: UGFV00000000 (NZ_UGFV00000000)
REBASE acronym: EcoC9124
Org_num: 43857
All begin NCTC9434_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2371 | Uncharacterized conserved protein | |||
| 2373 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoC9124I |
| 2374 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoC9124I |
| 2375 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoC9124IP |
| 2376 | methylated adenine and cytosine restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 349 | DamX protein | |||
| 350 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC9124DamP |
| 351 | ribulose-phosphate 3-epimerase | |||
| 471 | membrane protein | |||
| 472 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC9124ORF472P |
| 473 | DNA-binding protein Fis | |||
| 1145 | CPS-53 (KpLE1) prophage protein | |||
| 1146 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoC9124ORF1146P |
| 1147 | LexA repressor | |||
| 1312 | phage protein | |||
| ??? | M | M.EcoO18ORF8290P (100% identity) | M.EcoC9124ORFAP | |
| 1314 | transcriptional activator from phage | |||
| 2322 | Uncharacterised protein | |||
| 2323 | R | Ecoi127aORF4076P (100% identity) | EcoC9124ORF2323P | |
| 2324 | YjhS protein | |||
| 2974 | lipoprotein | |||
| 2975 | M | M.EcosE1ORFAP (100% identity) | M.EcoC9124ORF2975P | |
| 2977 | Lysis protein S | |||
| 3884 | lipoprotein | |||
| 3885 | M | M.SboBSORF1444P (100% identity) | A | M.EcoC9124ORF3885P |
| 3891 | phage protein YjhS encoded within prophage | |||
| 4526 | DMT superfamily transporter inner | |||
| 4527 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC9124DcmP |
| 4528 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoC9124Dcm |
| 4529 | phosphohydrolase | |||
| 4579 | LexA repressor | |||
| 4580 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoC9124ORF4580P |
| 4581 | CPS-53 (KpLE1) prophage protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1185 | DNA invertase | |||
| 1186 | R | EspFAAGmrSDP (100% identity) | EcoC9124GmrSDP | |
| 1187 | Uncharacterised protein | |||
| 2370 | transposase YhgA-like protein | |||
| 2371 | R | EcoSP15GmrSDP (100% identity) | EcoC9124GmrSD2P | |
| 2373 | EcoKI restriction-modification system protein | |||
| 2375 | type I restriction enzyme EcoKI subunit R | |||
| 2376 | R | EcosS1MrrP (100% identity) | EcoC9124MrrP | |
| 2377 | GTP-binding protein YjiA | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3716 | recombination protein ninB from phage origin | |||
| 3717 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoC9124ORF3717P |
| 3718 | protein ninx | |||