Escherichia coli NCTC9109 |
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Putative Escherichia coli NCTC9109 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,147,477 bp
GenBank #: UGDU00000000 (NZ_UGDU00000000)
REBASE acronym: EcoC9109
Org_num: 43847
All begin NCTC9109_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4437 | DNA-binding transcriptional regulator | |||
| 4438 | R | EcoFP3ORF9315P (100% identity) | CAAYNNNNNCTGC | EcoC9109IP |
| 4439 | M | M.EcosS3ORF12635P (100% identity) | CAAYNNNNNCTGC | M.EcoC9109I |
| 4440 | S | S.SflN116ORF3940P (99% identity) | CAAYNNNNNCTGC | S.EcoC9109I |
| 4441 | ATP-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 72 | Uncharacterised protein | |||
| 73 | M | M.EcoM1D1ORF43P (100% identity) | GCTAGC | M.EcoC9109II |
| 74 | R | EcoM1D1ORF43P (73% identity) | GCTAGC | EcoC9109IIP |
| 76 | transposase | |||
| 498 | DamX protein | |||
| 499 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC9109DamP |
| 500 | ribulose-phosphate 3-epimerase | |||
| 640 | membrane protein | |||
| 641 | M | M.Ecod6c8ORFAP (100% identity) | ATGCAT | M.EcoC9109ORF641P |
| 642 | DNA-binding protein Fis | |||
| 2067 | prophage protein ninB | |||
| 2068 | M | M.SflN97ORF15810P (100% identity) | GATC | M.EcoC9109ORF2068P |
| 2069 | protein ninx | |||
| 2155 | phosphohydrolase | |||
| 2156 | M | M.SflN107DcmP (100% identity) | CCWGG | M.EcoC9109DcmP |
| 2157 | V | V.SflFF59DcmP (100% identity) | V.EcoC9109DcmP | |
| 2158 | DMT superfamily transporter inner | |||
| 2927 | TraR/DksA family transcriptional regulator | |||
| 2928 | M | M.EcosBORF4330P (99% identity) | M.EcoC9109ORF2928P | |
| 2929 | replication protein for prophage | |||
| 3710 | phage protein | |||
| 3711 | M | M.Sbo812ORFAP (100% identity) | M.EcoC9109ORF3711P | |
| 3712 | ybl17 | |||
| 4423 | endonuclease | |||
| 4424 | R | Ecos19ORF20235P (99% identity) | EcoC9109ORF4424P | |
| 4425 | McrC family protein, McrBC 5-methylcytosine | |||
| 4458 | prophage polarity suppression protein | |||
| 4459 | M | M.EcoZ1836ORF24740P (100% identity) | RGGNCCY | M.EcoC9109ORF4459P |
| 4460 | R | EcoS3ORF17765P (100% identity) | RGGNCCY | EcoC9109ORF4459P |
| 4461 | C | C.EcoZ1836ORF24740P (100% identity) | CTAAGNNNNNCTTAG | C.EcoC9109ORF4459P |
| 4462 | site-specific recombinase, phage integrase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4424 | restriction endonuclease | |||
| 4425 | R | EcoPSJ29McrC2P (100% identity) | EcoC9109McrCP | |
| 4426 | R | EcoPSJ29McrB2P (89% identity) | EcoC9109McrBP | |
| 4427 | restriction methylase | |||