Escherichia coli NCTC9060 |
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Putative Escherichia coli NCTC9060 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,274,438 bp
GenBank #: UGDG00000000 (NZ_UGDG00000000)
REBASE acronym: Eco9060
Org_num: 43818
All begin NCTC9060_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1418 | hydrolase | |||
| 1419 | R | Ecoppa2ORF22455P (100% identity) | GATGNNNNNNTAC | Eco9060IP |
| 1420 | Uncharacterised protein | |||
| 1421 | metal-binding protein | |||
| 1422 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.Eco9060I |
| 1423 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.Eco9060I |
| 1424 | IS911 transposase orfB | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 89 | cytoplasmic protein | |||
| 90 | M | M.Sso3885ORF23215P (100% identity) | SAY | M.Eco9060ORF90P |
| 91 | YfdA | |||
| 577 | lipoprotein | |||
| 578 | M | M.SflJ17BORF23540P (100% identity) | A | M.Eco9060ORF578P |
| 583 | anti-adapter protein IraM | |||
| 1482 | DMT superfamily transporter inner | |||
| 1483 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.Eco9060DcmP |
| 1484 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco9060Dcm |
| 1485 | phosphohydrolase | |||
| 2170 | Protein of uncharacterised function (DUF3644) | |||
| 2171 | M | M.Kpn8895III (100% identity) | GAGCTC | M.Eco9060III |
| 2172 | R | Sen7349IP (100% identity) | GAGCTC | Eco9060IIIP |
| 2173 | Conjugal transfer protein TraD | |||
| 2905 | DNA-binding protein Fis | |||
| 2906 | M | M.SflSTLE4ORF2240P (99% identity) | ATGCAT | M.Eco9060ORF2906P |
| 2907 | membrane protein | |||
| 3032 | ribulose-phosphate 3-epimerase | |||
| 3033 | M | M.UbaC1152DamP (99% identity) | GATC | M.Eco9060DamP |
| 3034 | DamX protein | |||
| 4085 | transposase (partial) | |||
| 4086 | R | EcoE1441ORF4219P (100% identity) | Eco9060ORF4086P | |
| 4087 | acetoacetate metabolism regulator (two-component | |||
| 5196 | TraR/DksA family transcriptional regulator | |||
| 5197 | M | M.SflLIN17ORF14475P (100% identity) | GATC | M.Eco9060ORF5197P |
| 5198 | replication protein for prophage | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2538 | serine protease | |||
| 2539 | M | M.Kpn0718ORF815P (100% identity) | ACCACC | M.Eco9060II |
| 2540 | R | Kpn0718ORF815P (99% identity) | ACCACC | Eco9060IIP |
| 2541 | Uncharacterised protein | |||
| 4166 | helicase | |||
| 4167 | M | M.SflN116ORF19490P (99% identity) | GAACC | M.Eco9060IV |
| 4168 | R | SflN116ORF19490P (100% identity) | GAACC | Eco9060IVP |
| 4169 | Uncharacterised protein | |||