Escherichia coli NCTC8333 |
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Putative Escherichia coli NCTC8333 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
GenBank #: UGFE00000000
REBASE acronym: Eco8333
Org_num: 43767
All begin NCTC8333_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5037 | restriction methylase | |||
| 5038 | M | M.SflN110ORF19045P (100% identity) | CCANNNNNNNTGAA | M.Eco8333I |
| 5039 | S | S.EcoS7380ORFEP (100% identity) | CCANNNNNNNTGAA | S.Eco8333I |
| ??? | R | EcoS7380ORFEP (99% identity) | CCANNNNNNNTGAA | Eco8333IP |
| 5044 | restriction methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6272 | YfdA | |||
| 6273 | M | M.SspPIBORF23080P (100% identity) | M.Eco8333ORF6273P | |
| 6274 | cytoplasmic protein | |||
| 6296 | transposase | |||
| 6297 | M | M.EcoZLWTORF24570P (92% identity) | M.Eco8333ORF6297P | |
| 6298 | Uncharacterised protein | |||
| 6455 | glutaminyl-tRNA synthetase | |||
| ??? | M | M.EcoDEC12AORF5457P (99% identity) | M.Eco8333ORF6456P | |
| 6459 | exonuclease RdgC | |||
| 6493 | prophage protein | |||
| 6494 | M | M.EcoDEC12AORF5417P (90% identity) | M.Eco8333ORF6494P | |
| 6495 | Uncharacterised protein | |||
| 416 | DamX protein | |||
| 417 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco8333DamP |
| 418 | ribulose-phosphate 3-epimerase | |||
| 530 | membrane protein | |||
| 531 | M | M.EcoS7380ORFAP (100% identity) | ATGCAT | M.Eco8333ORF531P |
| 532 | DNA-binding protein Fis | |||
| 965 | ATP-dependent endonuclease (OLD family | |||
| ??? | R | EcoDLI5aORF8980P (99% identity) | Eco8333ORF968P | |
| 968 | M | M.EcoR37ORF3180P (100% identity) | M.Eco8333ORF968P | |
| 969 | Prophage integrase | |||
| 1473 | Tfp pilus assembly protein, major pilin PilA | |||
| 1474 | M | M.Ecos154ORF1441P (100% identity) | M.Eco8333ORF1474P | |
| 1475 | translation inhibitor protein RaiA | |||
| 2062 | lipoprotein | |||
| 2063 | M | M.EcoS6995ORFAP (100% identity) | M.Eco8333ORF2063P | |
| 2068 | YjhS | |||
| 2153 | Uncharacterised protein | |||
| 2154 | M | M.EcoSO40ORF23900P (100% identity) | M.Eco8333ORF2154P | |
| 2155 | replication protein for prophage | |||
| 2328 | lipoprotein | |||
| 2329 | M | M.EcoS7005ORFLP (100% identity) | M.Eco8333ORF2329P | |
| 2334 | YjhS | |||
| 2381 | phosphohydrolase | |||
| 2382 | M | M.EcoS7380DcmP (100% identity) | CCWGG | M.Eco8333DcmP |
| 2383 | V | V.SflFF59DcmP (100% identity) | V.Eco8333DcmP | |
| 2384 | DMT superfamily transporter inner | |||
| 3452 | anti-adapter protein IraM | |||
| 3456 | M | M.EcoS7438ORFNP (100% identity) | M.Eco8333ORF3456P | |
| 3457 | lipoprotein | |||
| 3522 | transmembrane phage holin | |||
| 3523 | M | M.Eal8ORF13265P (100% identity) | M.Eco8333ORF3523P | |
| 3524 | lipoprotein | |||
| 3757 | phage protein | |||
| 3762 | M | M.EcoDEC12EORF951P (100% identity) | M.Eco8333ORF3762P | |
| 3763 | lipoprotein | |||
| 4058 | NinF protein | |||
| 4059 | M | M.EcoS7380ORFIP (94% identity) | GATC | M.Eco8333ORF4059P |
| 4060 | recombination protein ninB from phage origin | |||
| 4360 | LexA repressor | |||
| 4361 | M | M.EcoSO40ORF27175P (100% identity) | GATC | M.Eco8333ORF4361P |
| 4362 | CPS-53 (KpLE1) prophage protein | |||
| 5033 | YjhS protein | |||
| 5034 | R | SflSTLE4ORF19250P (100% identity) | Eco8333ORF5034P | |
| 5035 | McrC family protein, McrBC 5-methylcytosine | |||
| 5462 | Crossover junction | |||
| 5463 | M | M.EcoS7380ORFJP (100% identity) | GATC | M.Eco8333ORF5463P |
| 5464 | CPS-53 (KpLE1) prophage protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5034 | restriction endonuclease | |||
| 5035 | R | SflSTLE4McrCP (100% identity) | Eco8333McrCP | |
| 5036 | R | SflSTLE4McrBP (100% identity) | Eco8333McrBP | |
| 5037 | restriction methylase | |||