Escherichia coli NCTC8179 |
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Putative Escherichia coli NCTC8179 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,740,510 bp
GenBank #: UGEB00000000 (NZ_UGEB00000000)
REBASE acronym: Eco8179
Org_num: 43766
All begin NCTC8179_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1044 | restriction methylase | |||
| ??? | R | EcoS7380ORFEP (100% identity) | CCANNNNNNNTGAA | Eco8179IP |
| 1047 | S | S.EcoS7380ORFEP (100% identity) | CCANNNNNNNTGAA | S.Eco8179I |
| ??? | M | M.SflN110ORF19045P (100% identity) | CCANNNNNNNTGAA | M.Eco8179I |
| 1051 | restriction methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7036 | lipoprotein | |||
| 7037 | M | M.EcoS7438ORFNP (47% identity) | M1.Eco8179ORF7037P | |
| 7038 | M | M.EcoS7438ORFNP (45% identity) | M2.Eco8179ORF7037P | |
| 7040 | restriction methylase | |||
| 7109 | cytoplasmic protein | |||
| ??? | M | M.Sfl74ORF26105P (94% identity) | M.Eco8179ORF7110P | |
| 7111 | YfdA | |||
| 97 | DMT superfamily transporter inner | |||
| ??? | V | V.SflFF59DcmP (100% identity) | V.Eco8179DcmP | |
| ??? | M | M.Eco8622DcmP (99% identity) | CCWGG | M.Eco8179DcmP |
| 102 | phosphohydrolase | |||
| 385 | replication protein for prophage | |||
| 386 | M | M.EcoSO40ORF23900P (100% identity) | M.Eco8179ORF386P | |
| 387 | Uncharacterised protein | |||
| 504 | phage protein YjhS encoded within prophage | |||
| 509 | M | M.EcoS6995ORFAP (100% identity) | M.Eco8179ORF509P | |
| 510 | lipoprotein | |||
| 1053 | McrC family protein, McrBC 5-methylcytosine | |||
| ??? | R | SflSTLE4ORF19250P (99% identity) | Eco8179ORF1054P | |
| 1056 | YjhS protein | |||
| 2158 | recombination protein ninB from phage origin | |||
| 2159 | M | M.EcoS7380ORFIP (94% identity) | GATC | M.Eco8179ORF2159P |
| 2160 | NinF protein | |||
| 2546 | lipoprotein | |||
| 2547 | M | M.EcoDEC12EORF951P (100% identity) | M.Eco8179ORF2547P | |
| 2552 | phage protein | |||
| 2959 | lipoprotein | |||
| ??? | M | M.EcoS7438ORFNP (99% identity) | M.Eco8179ORF2960P | |
| 2963 | restriction methylase | |||
| 4234 | small toxic polypeptide | |||
| 4235 | M | M.Eco8007ORF5371P (100% identity) | M.Eco8179ORF4235P | |
| 4236 | translation inhibitor protein RaiA | |||
| 4991 | Crossover junction | |||
| 4992 | M | M.EcoS7380ORFJP (100% identity) | GATC | M.Eco8179ORF4992P |
| 4993 | CPS-53 (KpLE1) prophage protein | |||
| 5865 | DamX protein | |||
| 5866 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco8179DamP |
| 5867 | ribulose-phosphate 3-epimerase | |||
| 5987 | membrane protein | |||
| ??? | M | M.EcoS7380ORFAP (100% identity) | ATGCAT | M.Eco8179ORF5988P |
| 5990 | tRNA-dihydrouridine synthase B | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1051 | restriction methylase | |||
| 1052 | R | Eco8622McrBP (100% identity) | Eco8179McrBP | |
| 1053 | R | SflSTLE4McrCP (100% identity) | Eco8179McrCP | |
| 1054 | restriction endonuclease | |||