Escherichia coli NCTC8009 |
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Putative Escherichia coli NCTC8009 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
GenBank #: UARW00000000
REBASE acronym: Eco8009
Org_num: 43764
All begin NCTC8009_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7712 | restriction methylase | |||
| ??? | M | M.SflN110ORF19045P (100% identity) | CCANNNNNNNNTGAA | M.Eco8009II |
| ??? | S | S.EcoO111ORFAP (100% identity) | CCANNNNNNNNTGAA | S.Eco8009II |
| 7718 | R | EcoS7380ORFEP (97% identity) | CCANNNNNNNNTGAA | Eco8009IIP |
| 7719 | restriction methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 292 | YfdA | |||
| 293 | M | M.SflP099ORF24775P (100% identity) | M.Eco8009ORF293P | |
| 294 | cytoplasmic protein | |||
| 456 | Uncharacterised protein | |||
| 457 | M | M.Sso866ORF27155P (100% identity) | M.Eco8009ORF457P | |
| 458 | cytoplasmic protein | |||
| 599 | glutaminyl-tRNA synthetase | |||
| 600 | M | M.EcosB2CORFIP (42% identity) | M.Eco8009ORF600P | |
| 601 | DNA methyltransferase | |||
| 1413 | DamX protein | |||
| 1414 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco8009DamP |
| 1415 | ribulose-phosphate 3-epimerase | |||
| 1560 | membrane protein | |||
| 1561 | M | M.EcoS7380ORFAP (100% identity) | ATGCAT | M.Eco8009ORF1561P |
| 1562 | DNA-binding protein Fis | |||
| 2150 | Uncharacterised protein | |||
| 2151 | R | EcoR37ORF3180P (57% identity) | Eco8009ORF2152P | |
| 2152 | M | M.EcoR37ORF3180P (100% identity) | M.Eco8009ORF2152P | |
| 2153 | Prophage integrase | |||
| 3628 | lipoprotein | |||
| 3629 | M | M.EcoS6995ORFAP (100% identity) | M.Eco8009ORF3629P | |
| 3634 | phage protein YjhS encoded within prophage | |||
| 5108 | DMT superfamily transporter inner | |||
| ??? | V | V.SflFF59DcmP (98% identity) | V.Eco8009DcmP | |
| ??? | M | M.EcoS7380DcmP (93% identity) | M.Eco8009DcmP | |
| 5112 | phosphohydrolase | |||
| 5181 | DNA methylase | |||
| 5182 | M | M.EcoS7005ORFLP (79% identity) | M.Eco8009ORF5182P | |
| 5183 | lipoprotein | |||
| 5428 | Uncharacterised protein | |||
| 5429 | M | M.EcoSO40ORF23900P (100% identity) | M.Eco8009ORF5429P | |
| 5430 | Uncharacterised protein | |||
| 5562 | anti-adapter protein IraM | |||
| ??? | M | M.EcoS7438ORFNP (99% identity) | M.Eco8009ORF5566P | |
| 5568 | lipoprotein | |||
| 5874 | phage protein | |||
| 5879 | M | M.EcoDEC12EORF951P (100% identity) | M.Eco8009ORF5879P | |
| 5880 | lipoprotein | |||
| 6750 | LexA repressor | |||
| 6751 | M | M.EcoSO40ORF27175P (100% identity) | GATC | M.Eco8009ORF6751P |
| 6752 | CPS-53 (KpLE1) prophage protein | |||
| 7706 | YjhS protein | |||
| ??? | R | SflSTLE4ORF19250P (100% identity) | Eco8009ORF7707P | |
| 7708 | McrC family protein, McrBC 5-methylcytosine | |||
| 8289 | Crossover junction | |||
| 8290 | M | M.EcoS7380ORFJP (100% identity) | M.Eco8009ORF8290P | |
| 8291 | CPS-53 (KpLE1) prophage protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7707 | restriction endonuclease | |||
| ??? | R | SflSTLE4McrCP (93% identity) | Eco8009McrCP | |
| ??? | R | SflSTLE4McrBP (99% identity) | Eco8009McrBP | |
| 7712 | restriction methylase | |||