Escherichia coli NCTC8007 |
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Putative Escherichia coli NCTC8007 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,799,292 bp
GenBank #: UASE00000000 (NZ_UASE00000000)
REBASE acronym: Eco8007
Org_num: 43762
All begin NCTC8007_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1912 | ybl103 | |||
| 1913 | M | M.EcosB2CORFEP (100% identity) | GAGNNNNNGTNG | M.Eco8007I |
| 1914 | S | S.EcoR8ORF20135P (100% identity) | GAGNNNNNGTNG | S.Eco8007I |
| 1915 | Uncharacterised protein | |||
| 1916 | RNase III inhibitor | |||
| 1917 | R | Sbo49812IP (100% identity) | GAGNNNNNGTNG | Eco8007IP |
| 1918 | hydrolase | |||
| 3235 | restriction methylase | |||
| 3236 | M | M.SflN110ORF19045P (100% identity) | CCANNNNNNNTGAA | M.Eco8007II |
| 3237 | S | S.EcoS7380ORFEP (100% identity) | CCANNNNNNNTGAA | S.Eco8007II |
| 3238 | R | EcoS7380ORFEP (100% identity) | CCANNNNNNNTGAA | Eco8007IIP |
| 3239 | restriction methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5978 | cytoplasmic protein | |||
| 5979 | M | M.EcoC9111ORF400P (100% identity) | M.Eco8007ORF5979P | |
| 5980 | YfdA | |||
| 6056 | cytoplasmic protein | |||
| 6057 | M | M.EcoC9111ORF400P (100% identity) | M.Eco8007ORF6057P | |
| 6058 | YfdA | |||
| 276 | lipoprotein | |||
| 277 | M | M.EcoS6995ORFAP (100% identity) | M.Eco8007ORF277P | |
| 282 | YjhS | |||
| 365 | Uncharacterised protein | |||
| 366 | M | M.EcoSO40ORF23900P (100% identity) | M.Eco8007ORF366P | |
| 367 | replication protein for prophage | |||
| 525 | lipoprotein | |||
| 526 | M | M.EcoS7005ORFLP (100% identity) | M.Eco8007ORF526P | |
| 531 | YjhS | |||
| 584 | phosphohydrolase | |||
| 585 | M | M.EcoS7380DcmP (99% identity) | CCWGG | M.Eco8007DcmP |
| 586 | V | V.SflFF59DcmP (100% identity) | V.Eco8007DcmP | |
| 587 | DMT superfamily transporter inner | |||
| 1776 | restriction methylase | |||
| 1778 | M | M.EcoS7438ORFNP (100% identity) | M.Eco8007ORF1778P | |
| 1779 | lipoprotein | |||
| 2065 | phage protein | |||
| 2070 | M | M.EcoDEC12EORF951P (100% identity) | M.Eco8007ORF2070P | |
| 2071 | lipoprotein | |||
| 2343 | NinF protein | |||
| 2344 | M | M.EcoS7380ORFIP (94% identity) | GATC | M.Eco8007ORF2344P |
| 2345 | recombination protein ninB from phage origin | |||
| 3231 | YjhS protein | |||
| 3232 | R | SflSTLE4ORF19250P (100% identity) | Eco8007ORF3232P | |
| 3233 | McrC family protein, McrBC 5-methylcytosine | |||
| 3676 | Crossover junction | |||
| 3677 | M | M.EcoS7380ORFJP (100% identity) | GATC | M.Eco8007ORF3677P |
| 3678 | CPS-53 (KpLE1) prophage protein | |||
| 4451 | DamX protein | |||
| 4452 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco8007DamP |
| 4453 | ribulose-phosphate 3-epimerase | |||
| 4564 | membrane protein | |||
| 4565 | M | M.EcoS7380ORFAP (100% identity) | ATGCAT | M.Eco8007ORF4565P |
| 4566 | DNA-binding protein Fis | |||
| 5370 | Tfp pilus assembly protein, major pilin PilA | |||
| 5371 | M | M.Eco8179ORF4235P (100% identity) | M.Eco8007ORF5371P | |
| 5372 | translation inhibitor protein RaiA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3232 | restriction endonuclease | |||
| 3233 | R | SflSTLE4McrCP (100% identity) | Eco8007McrCP | |
| 3234 | R | SflSTLE4McrBP (100% identity) | Eco8007McrBP | |
| 3235 | restriction methylase | |||