Escherichia coli NCTC13462 |
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Putative Escherichia coli NCTC13462 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
GenBank #: UARY00000000
REBASE acronym: Eco13462
Org_num: 43745
All begin NCTC13462_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4561 | ATP-dependent helicase | |||
| 4562 | R | EmaC12ORF18910P (100% identity) | GAACNNNNNTGC | Eco13462IP |
| 4563 | M | M.Sen6640ORF2690P (100% identity) | GAACNNNNNTGC | M.Eco13462I |
| 4564 | S | S.SflN101ORF19075P (100% identity) | GAACNNNNNTGC | S.Eco13462I |
| 4565 | Uncharacterised protein | |||
| 2464 | restriction endonuclease | |||
| ??? | M | M.Esp9308ORFIP (92% identity) | CGTANNNNNGTC | M.Eco13462II |
| 2467 | S | S.EcoSH3ORF25175P (100% identity) | CGTANNNNNGTC | S.Eco13462II |
| 2468 | R | EcoR31ORF16485P (100% identity) | CGTANNNNNGTC | Eco13462IIP |
| 2470 | Uncharacterized conserved protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3213 | LexA repressor | |||
| 3214 | M | M.Efe1438ORF17305P (100% identity) | GATC | M.Eco13462ORF3214P |
| 3215 | CPS-53 (KpLE1) prophage protein | |||
| 17 | IS911 transposase orfB | |||
| 19 | M | M.Eco3829ORF29660P (100% identity) | SAY | M.Eco13462ORF19P |
| 20 | cytoplasmic protein | |||
| 6460 | YfdA | |||
| ??? | M | M.SspPIBORF23080P (99% identity) | M.Eco13462ORF6461P | |
| 6462 | cytoplasmic protein | |||
| 2961 | Uncharacterised protein | |||
| 2962 | M | M.YpsF1ORFCP (100% identity) | M.Eco13462ORF2962P | |
| 2963 | nuclease | |||
| 260 | Uncharacterised protein | |||
| 264 | M | M.Sen94620ORF28085P (100% identity) | M.Eco13462ORF264P | |
| 265 | recombination associated protein | |||
| 3081 | Uncharacterised protein | |||
| 3082 | M | M.YpsF1ORFBP (100% identity) | M.Eco13462ORF3082P | |
| 3083 | Spermidine synthase | |||
| 3106 | DNA-binding plasmid partitioning protein | |||
| 3107 | M | M.YpsF1ORFDP (95% identity) | M.Eco13462ORF3107P | |
| 3108 | Uncharacterised protein | |||
| 950 | LexA repressor | |||
| 951 | M | M.Eco3829ORF11025P (100% identity) | GATC | M.Eco13462ORF951P |
| 952 | CPS-53 (KpLE1) prophage protein | |||
| 4011 | DamX protein | |||
| 4012 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco13462DamP |
| 4013 | ribulose-phosphate 3-epimerase | |||
| 4142 | membrane protein | |||
| 4143 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco13462ORF4143P |
| 4144 | DNA-binding protein Fis | |||
| 5523 | Replication gene A protein (GpA) | |||
| ??? | R | Ecostr10ORF20P (100% identity) | GRGCYC | Eco13462ORF5527P |
| 5526 | C | C.Ecostr10ORF20P (100% identity) | C.Eco13462ORF5527P | |
| 5527 | M | M.EcoS19141ORF25P (90% identity) | GRGCYC | M.Eco13462ORF5527P |
| 5528 | phage capsid protein | |||
| 5719 | phosphohydrolase | |||
| 5720 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco13462DcmP |
| 5721 | V | V.SsoSE61DcmP (100% identity) | V.Eco13462DcmP | |
| 5722 | DMT superfamily transporter inner | |||
| 5992 | prophage protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco13462ORF5993P | |
| 5994 | membrane protein | |||
| 6250 | Lysis protein S | |||
| 6251 | M | M.Eco3829ORF12745P (89% identity) | M.Eco13462ORF6251P | |
| 6252 | lipoprotein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 682 | DNA invertase from prophage CP-933H | |||
| 683 | R | EcoMB19ORF20745P (100% identity) | YCGR | Eco13462ORF683P |
| 684 | isocitrate dehydrogenase | |||
| 897 | isocitrate dehydrogenase | |||
| 898 | R | EcoMB19ORF20745P (100% identity) | YCGR | Eco13462ORF898P |
| 899 | DNA invertase from prophage CP-933H | |||
| 2468 | type I restriction-modification system | |||
| 2470 | R | Eco7927GmrDP (55% identity) | Eco13462GmrDP | |
| 2471 | R | SflN101GmrSP (98% identity) | Eco13462GmrSP | |
| 2472 | protein YjiS | |||