Escherichia coli NCTC13400 |
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Putative Escherichia coli NCTC13400 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 4,728,186 bp
GenBank #: UFZK00000000 (NZ_UFZK00000000)
REBASE acronym: Eco13400
Org_num: 43741
All begin NCTC13400_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4444 | methylated adenine and cytosine restriction | |||
| ??? | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | Eco13400IP |
| 4447 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco13400I |
| 4448 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco13400I |
| 4450 | 5-methylcytosine-specific restriction enzyme | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3 | YfdA | |||
| 4 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco13400ORF4P |
| 5 | cytoplasmic protein | |||
| 546 | DamX protein | |||
| ??? | M | M.UbaC1152DamP (99% identity) | GATC | M.Eco13400DamP |
| 548 | ribulose-phosphate 3-epimerase | |||
| 689 | membrane protein | |||
| 690 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco13400ORF690P |
| 691 | DNA-binding protein Fis | |||
| 2186 | phosphohydrolase | |||
| ??? | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco13400DcmP |
| ??? | V | V.SflFF64DcmP (100% identity) | V.Eco13400DcmP | |
| 2189 | DMT superfamily transporter inner | |||
| 3054 | Xis | |||
| ??? | M | M.EcoNEB10bORF6575P (100% identity) | M.Eco13400ORF3056P | |
| 3057 | Uncharacterised protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3181 | isocitrate dehydrogenase | |||
| ??? | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco13400ORF3182P |
| 3184 | DNA invertase from prophage CP-933H | |||
| 4443 | GTP-binding protein YjiA | |||
| 4444 | R | SenHNK130MrrP (100% identity) | Eco13400MrrP | |
| 4445 | type I restriction enzyme EcoKI subunit R | |||
| 4448 | EcoKI restriction-modification system protein | |||
| ??? | R | SenHNK130McrBP (100% identity) | Eco13400McrBP | |
| ??? | R | SenHNK130McrCP (99% identity) | Eco13400McrCP | |
| 4454 | DEAD-box helicase-like protein | |||