Escherichia coli NCTC13353 |
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Putative Escherichia coli NCTC13353 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,641,827 bp
GenBank #: UASB00000000 (NZ_UASB00000000)
REBASE acronym: Eco13353
Org_num: 43739
All begin NCTC13353_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1811 | protein YjiS | |||
| 1813 | R | EcosS9ORF3165P (100% identity) | CACNNNNGTAY | Eco13353IIIP |
| 1814 | S | S.Ecos9ORF22265P (45% identity) | CACNNNNGTAY | S2.Eco13353III |
| 1815 | S | S.Ecop4AORF21290P (56% identity) | CACNNNNGTAY | S1.Eco13353III |
| 1816 | M | M.EcosS9ORF3165P (100% identity) | CACNNNNGTAY | M.Eco13353III |
| 1817 | restriction endonuclease | |||
| 2197 | Uncharacterised protein | |||
| 2200 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco13353I |
| 2201 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco13353I |
| 2202 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco13353IP |
| 2203 | Protein of unknwon function (DUF2893) | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1396 | CPS-53 (KpLE1) prophage protein | |||
| 1397 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco13353ORF262P |
| 1398 | LexA repressor | |||
| 7 | IS1 protein InsB | |||
| ??? | M | M.SflSTLE4ORF22820P (99% identity) | CCWGG | M.Eco13353ORF9P |
| 10 | R | Ssp3CORF24390P (90% identity) | CCWGG | Eco13353ORF9P |
| 11 | site-specific DNA recombinase; e14 prophage | |||
| 5703 | protein stbB | |||
| 5704 | M | M.Ssp14523ORF22990P (100% identity) | M.Eco13353ORF5704P | |
| 5705 | cytoplasmic protein | |||
| 5816 | YfdA | |||
| 5817 | M | M.UbapRSB107ORFAP (99% identity) | SAY | M.Eco13353ORF5817P |
| 5818 | cytoplasmic protein | |||
| 61 | IS1 protein InsB | |||
| ??? | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.Eco13353ORF62P |
| 63 | R | Eco3934ORF23380P (100% identity) | CCWGG | R1.Eco13353ORF62P |
| 64 | R | Sso29930ORFDP (40% identity) | CCWGG | R2.Eco13353ORF62P |
| 65 | DNA invertase | |||
| 164 | Uncharacterised protein | |||
| 167 | M | M.Sen94620ORF28085P (99% identity) | M.Eco13353ORF167P | |
| 168 | recombination associated protein | |||
| 1093 | DamX protein | |||
| 1094 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco13353DamP |
| 1095 | ribulose-phosphate 3-epimerase | |||
| 1218 | membrane protein | |||
| ??? | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco13353ORF1219P |
| 1220 | DNA-binding protein Fis | |||
| 1404 | Uncharacterised protein | |||
| 1405 | M | M.Sso63633ORF22290P (73% identity) | M.Eco13353ORF1405P | |
| 1406 | phage lysis protein | |||
| 1746 | transposase | |||
| 1747 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco13353II |
| 1748 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco13353II |
| 1749 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco13353IIP |
| 1750 | 5-methylcytosine restriction system component | |||
| 2933 | Uncharacterised protein | |||
| 2934 | M | M.KpnYN1ORFGP (89% identity) | M.Eco13353ORF2934P | |
| 2935 | transcriptional repressor DicA | |||
| 3402 | lipoprotein | |||
| 3403 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco13353ORF3403P |
| 3407 | anti-adapter protein IraM | |||
| 4143 | DMT superfamily transporter inner | |||
| 4144 | V | V.SflC32DcmP (74% identity) | V.Eco13353DcmP | |
| 4145 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco13353DcmP |
| 4146 | phosphohydrolase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1749 | restriction endonuclease | |||
| 1750 | R | EcosS9McrCP (100% identity) | Eco13353McrCP | |
| 1751 | R | EcosS3McrBP (100% identity) | Eco13353McrBP | |
| 1752 | glycosyltransferase | |||