Escherichia coli NCTC13352 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli NCTC13352 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 4,775,452 bp
GenBank #: UFZZ00000000 (NZ_UFZZ00000000)
REBASE acronym: Eco13352
Org_num: 43738
All begin NCTC13352_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4704 | methylated adenine and cytosine restriction | |||
| ??? | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | Eco13352IP |
| 4707 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco13352I |
| ??? | S | S.SenHNK130ORF17125P (99% identity) | AACNNNNNNGTGC | S.Eco13352I |
| 4711 | 5-methylcytosine-specific restriction enzyme | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 78 | site-specific DNA recombinase; e14 prophage | |||
| 79 | R | Ssp3CORF24390P (100% identity) | CCWGG | Eco13352ORF80P |
| ??? | M | M.Sso12984ORF5284P (100% identity) | CCWGG | M.Eco13352ORF80P |
| 81 | Uncharacterised protein | |||
| 491 | DamX protein | |||
| 492 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco13352DamP |
| 493 | ribulose-phosphate 3-epimerase | |||
| 637 | membrane protein | |||
| ??? | M | M.SenHNK130ORF11595P (99% identity) | ATGCAT | M.Eco13352ORF638P |
| 640 | DNA-binding protein Fis | |||
| 1743 | CPS-53 (KpLE1) prophage protein | |||
| 1744 | M | M.Sso90ORF15820P (40% identity) | M.Eco13352ORF1744P | |
| 1745 | CPS-53 (KpLE1) prophage protein | |||
| 2252 | phosphohydrolase | |||
| 2253 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco13352DcmP |
| 2254 | V | V.SflFF64DcmP (100% identity) | V.Eco13352DcmP | |
| 2255 | DMT superfamily transporter inner | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 39 | DNA invertase from prophage CP-933H | |||
| ??? | R | SsoSE61ORF22640P (98% identity) | YCGR | Eco13352McrAP |
| 42 | isocitrate dehydrogenase | |||
| 3219 | isocitrate dehydrogenase | |||
| 3220 | R | SsoSE61ORF22640P (98% identity) | YCGR | Eco13352McrAP |
| 3221 | tail fiber assembly | |||
| 4702 | GTP-binding protein YjiA | |||
| ??? | R | SenHNK130MrrP (100% identity) | Eco13352MrrP | |
| 4705 | type I restriction enzyme EcoKI subunit R | |||
| 4709 | EcoKI restriction-modification system protein | |||
| ??? | R | SenHNK130McrBP (100% identity) | Eco13352McrBP | |
| 4712 | R | SenHNK130McrCP (100% identity) | Eco13352McrCP | |
| 4713 | DEAD-box helicase-like protein | |||