Escherichia coli NCTC13128 |
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Putative Escherichia coli NCTC13128 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,461,424 bp
GenBank #: UGGA00000000 (NZ_UGGA00000000)
REBASE acronym: Eco13128
Org_num: 43734
All begin NCTC13128_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2309 | Uncharacterized conserved protein | |||
| 2310 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco13128IP |
| 2311 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco13128I |
| 2312 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco13128I |
| 2314 | Uncharacterized conserved protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 108 | cytoplasmic protein | |||
| 109 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco13128ORF109P | |
| 110 | YfdA | |||
| 350 | lipoprotein | |||
| 352 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco13128ORF352P | |
| 356 | YjhS | |||
| 1961 | LexA repressor | |||
| 1962 | M | M.EcoZ1836ORF22690P (100% identity) | GATC | M.Eco13128ORF1962P |
| 1963 | CPS-53 (KpLE1) prophage protein | |||
| 2357 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco13128II |
| 2358 | helicase domain-containing protein | |||
| 2364 | N-acetylneuraminate epimerase 2 | |||
| 2365 | R | Ecos1613ORF26795P (100% identity) | Eco13128ORF2365P | |
| 2366 | integrase | |||
| 2377 | prophage polarity suppression protein | |||
| 2378 | M | M.EcoZ1836ORF24740P (100% identity) | RGGNCCY | M.Eco13128ORF2378P |
| 2379 | R | EcoS3ORF17765P (100% identity) | RGGNCCY | Eco13128ORF2378P |
| 2380 | C | C.EcoZ1836ORF24740P (100% identity) | CTAAGNNNNNCTTAG | C.Eco13128ORF2378P |
| 2381 | site-specific recombinase, phage integrase | |||
| 3418 | DamX protein | |||
| 3419 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco13128DamP |
| 3420 | ribulose-phosphate 3-epimerase | |||
| 3525 | membrane protein | |||
| 3526 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco13128ORF3526P |
| 3527 | DNA-binding protein Fis | |||
| 4939 | phosphohydrolase | |||
| 4940 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco13128DcmP |
| 4941 | V | V.EcosPA8DcmP (100% identity) | V.Eco13128DcmP | |
| 4942 | DMT superfamily transporter inner | |||
| 5390 | lipoprotein | |||
| 5391 | M | M.EcoZ1836ORF13250P (100% identity) | M.Eco13128ORF5391P | |
| 5393 | YjhS | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2312 | type I restriction-modification system subunit | |||
| 2314 | R | EcosPA8GmrSDP (55% identity) | Eco13128GmrDP | |
| 2315 | R | Ecos1613GmrSP (100% identity) | Eco13128GmrSP | |
| 2316 | protein YjiS | |||