Escherichia coli NCTC12900 |
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Putative Escherichia coli NCTC12900 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,613,409 bp
GenBank #: UFZH00000000 (NZ_UFZH00000000)
REBASE acronym: Eco12900
Org_num: 43729
All begin NCTC12900_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2928 | Uncharacterized conserved protein | |||
| 2930 | S | S.Eco3614ORF24295P (100% identity) | CACNNNNNNNCTGG | S.Eco12900I |
| 2931 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco12900I |
| 2932 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco12900IP |
| 2933 | Uncharacterized conserved protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12 | YjhS | |||
| 14 | M | M.EcoZ1836ORF13250P (100% identity) | M.Eco12900ORF14P | |
| 15 | lipoprotein | |||
| 5343 | cytoplasmic protein | |||
| 5344 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco12900ORF5344P | |
| 5345 | YfdA | |||
| 429 | DMT superfamily transporter inner | |||
| 430 | V | V.EcosPA8DcmP (100% identity) | V.Eco12900DcmP | |
| 431 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco12900DcmP |
| 432 | phosphohydrolase | |||
| 4723 | lipoprotein | |||
| 4724 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco12900ORF4724P | |
| 4728 | YjhS | |||
| 1680 | DNA-binding protein Fis | |||
| 1681 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco12900ORF1681P |
| 1682 | membrane protein | |||
| 1787 | ribulose-phosphate 3-epimerase | |||
| 1788 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco12900DamP |
| 1789 | DamX protein | |||
| 2627 | Uncharacterised protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.Eco12900ORF2628P | |
| 2629 | Eae protein | |||
| 2861 | site-specific recombinase, phage integrase | |||
| 2862 | C | C.EcoZ1836ORF24740P (100% identity) | CTAAGNNNNNCTTAG | C.Eco12900ORF2864P |
| 2863 | R | EcoS3ORF17765P (100% identity) | RGGNCCY | Eco12900ORF2864P |
| 2864 | M | M.EcoZ1836ORF24740P (100% identity) | RGGNCCY | M.Eco12900ORF2864P |
| 2865 | prophage polarity suppression protein | |||
| 2876 | integrase | |||
| 2877 | R | Ecos1613ORF26795P (100% identity) | Eco12900ORF2877P | |
| 2878 | N-acetylneuraminate epimerase 2 | |||
| 2884 | helicase domain-containing protein | |||
| 2885 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco12900II |
| 2972 | CPS-53 (KpLE1) prophage protein | |||
| 2973 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco12900ORF2973P |
| 2974 | LexA repressor | |||
| 3336 | CPS-53 (KpLE1) prophage protein | |||
| 3337 | M | M.EcoZ1836ORF22690P (100% identity) | GATC | M.Eco12900ORF3337P |
| 3338 | LexA repressor | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2926 | protein YjiS | |||
| 2927 | R | Ecos1613GmrSP (100% identity) | Eco12900GmrSP | |
| 2928 | R | EcosPA8GmrSDP (55% identity) | Eco12900GmrDP | |
| 2930 | type I restriction-modification system subunit | |||