Escherichia coli NCTC12241 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli NCTC12241 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,231,253 bp
GenBank #: UFZV00000000 (NZ_UFZV00000000)
REBASE acronym: Eco12241
Org_num: 43723
All begin NCTC12241_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4379 | restriction endonuclease | |||
| 4380 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco12241I |
| 4381 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco12241I |
| 4382 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco12241IP |
| 4384 | protein YjiS | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | Uncharacterised protein | |||
| 57 | M | M.EcoZLWTORF24570P (100% identity) | M.Eco12241ORF57P | |
| 58 | Uncharacterised protein | |||
| 502 | DamX protein | |||
| 503 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco12241DamP |
| 504 | ribulose-phosphate 3-epimerase | |||
| 625 | membrane protein | |||
| 626 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco12241ORF626P |
| 627 | DNA-binding protein Fis | |||
| 2148 | phosphohydrolase | |||
| 2149 | M | M.SflC32DcmP (100% identity) | CCWGG | M.Eco12241DcmP |
| 2150 | V | V.EcosC25DcmP (100% identity) | V.Eco12241DcmP | |
| 2151 | DMT superfamily transporter inner | |||
| 4450 | 5-methylcytosine restriction system component | |||
| 4451 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco12241IIP |
| 4452 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco12241II |
| 4453 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco12241II |
| 4454 | transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4448 | transposase | |||
| 4449 | R | EcosS9McrBP (93% identity) | Eco12241McrBP | |
| 4450 | R | EcosS9McrCP (100% identity) | Eco12241McrCP | |
| 4451 | restriction endonuclease | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2970 | protein ninx | |||
| 2971 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco12241ORF2971P |
| 2972 | recombination protein ninB from phage origin | |||