Escherichia coli NCTC10961 |
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Putative Escherichia coli NCTC10961 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,085,056 bp
GenBank #: UGCE00000000 (NZ_UGCE00000000)
REBASE acronym: Eco10961
Org_num: 43686
All begin NCTC10961_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 54 | replication protein for prophage | |||
| 55 | M | M.SflLIN8ORF15450P (100% identity) | GATC | M.Eco10961ORF55P |
| 56 | TraR/DksA family transcriptional regulator | |||
| 685 | Holin | |||
| 686 | M | M.SflLIN17ORF17405P (99% identity) | M.Eco10961ORF686P | |
| 687 | lipoprotein | |||
| 731 | integrase | |||
| ??? | M | M.PanLORF19300P (100% identity) | YGGCCR | M.Eco10961ORF732P |
| ??? | R | Ecos81ORF18545P (100% identity) | YGGCCR | Eco10961ORF732P |
| 735 | Integrase | |||
| 2110 | DamX protein | |||
| 2111 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco10961DamP |
| 2112 | ribulose-phosphate 3-epimerase | |||
| 2240 | membrane protein | |||
| 2241 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco10961ORF2241P |
| 2242 | DNA-binding protein Fis | |||
| 2934 | Conserved phage C-terminus (Phg_2220_C) | |||
| 2935 | M | M2.Eas1009ORF15025P (98% identity) | M1.Eco10961ORF2935P | |
| 2936 | M | M.EcoEc40ORF24265P (99% identity) | M2.Eco10961ORF2935P | |
| 2937 | antirepressor in prophage | |||
| 2941 | Serine dehydrogenase proteinase | |||
| 2942 | M | M.Ero1505ORF7640P (100% identity) | M.Eco10961ORF2942P | |
| 2943 | Uncharacterised protein | |||
| 3771 | phosphohydrolase | |||
| 3772 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco10961DcmP |
| 3773 | V | V.SsoSE61DcmP (100% identity) | V.Eco10961DcmP | |
| 3774 | DMT superfamily transporter inner | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3723 | SpnT protein | |||
| 3724 | M | M.Kpni15bORF1643P (100% identity) | M.Eco10961ORF3724P | |
| 3725 | R | Sen25333ORF11050P (22% identity) | Eco10961ORF3724AP | |
| 3726 | IS1 transposase | |||
| 3727 | IS1 transposase | |||
| 3728 | R | EcoO81ORFBP (74% identity) | Eco10961ORF3724BP | |
| 3729 | PilV-like protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5278 | IS621, transposase | |||
| 5279 | R | PgeFB2McrC2P (100% identity) | Eco10961McrCP | |
| 5280 | R | KpnM9111McrBP (100% identity) | Eco10961McrBP | |
| 5281 | transposase IS3 family | |||
| 1097 | endoribonuclease SymE | |||
| 1098 | R | SflLIN8GmrSDP (100% identity) | Eco10961GmrSDP | |
| 1099 | protein YjiS | |||