Escherichia coli NCTC10082 |
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Putative Escherichia coli NCTC10082 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,838,455 bp
GenBank #: UFZA00000000 (NZ_UFZA00000000)
REBASE acronym: Eco10082
Org_num: 43658
All begin NCTC10082_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1680 | methylated adenine and cytosine restriction | |||
| 1681 | R | EcoC1738ORF24345P (100% identity) | CTANNNNNNNCTAY | Eco10082IP |
| 1682 | M | M.EcoC1738ORF24345P (100% identity) | CTANNNNNNNCTAY | M.Eco10082I |
| 1683 | S | S.Eco16C13ORF22655P (100% identity) | CTANNNNNNNCTAY | S.Eco10082I |
| 1685 | 5-methylcytosine-specific restriction enzyme | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5303 | Uncharacterised protein | |||
| 5304 | M | M.EcoLHM101ORFIP (96% identity) | GATC | M.Eco10082ORF5304P |
| 5305 | recombination protein ninB from phage origin | |||
| 5855 | exonuclease RdgC | |||
| 5856 | M | M.EcoRL465ORFIP (62% identity) | M.Eco10082ORF5856P | |
| 5857 | glutaminyl-tRNA synthetase | |||
| 5637 | cytoplasmic protein | |||
| 5638 | M | M.SflN101ORF24625P (100% identity) | M.Eco10082ORF5638P | |
| 5639 | YfdA | |||
| 3632 | lipoprotein | |||
| 3633 | M | M.EcoC1744ORF6450P (100% identity) | M.Eco10082ORF3633P | |
| 3635 | Uncharacterised protein | |||
| 5254 | lipoprotein | |||
| 5255 | M | M.EcoW26ORF35400P (100% identity) | M.Eco10082ORF5255P | |
| 5256 | Uncharacterised protein | |||
| 387 | Shiga toxin 2 subunit A | |||
| 390 | M | M.Ecocq9ORF19465P (100% identity) | M.Eco10082ORF390P | |
| 391 | lipoprotein | |||
| 915 | LexA repressor | |||
| 916 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco10082ORF916P |
| 917 | CPS-53 (KpLE1) prophage protein | |||
| 4316 | recombination protein ninB from phage origin | |||
| 4317 | M | M.EcoLHM101ORFIP (96% identity) | GATC | M.Eco10082ORF4317P |
| 4318 | Uncharacterised protein | |||
| 4435 | phosphohydrolase | |||
| 4436 | M | M.EcoC1738DcmP (100% identity) | CCWGG | M.Eco10082DcmP |
| 4437 | V | V.EcoC1738DcmP (100% identity) | V.Eco10082DcmP | |
| 4438 | DMT superfamily transporter inner | |||
| 4612 | lipoprotein | |||
| 4613 | M | M.EcoP136ORF10095P (100% identity) | M.Eco10082ORF4613P | |
| 4616 | tellurite resistance protein TciA | |||
| 1285 | Flagellar basal-body P-ring formation protein | |||
| ??? | M | M.Eco6C06ORF19785P (100% identity) | M.Eco10082ORF1286P | |
| 1287 | R | EcoC1738ORF22460P (100% identity) | Eco10082ORF1286P | |
| 1288 | lateral flagellar anti-sigma factor 28 protein | |||
| 1641 | LexA repressor | |||
| 1642 | M | M.Sso30ORF925P (100% identity) | GATC | M.Eco10082ORF1642P |
| 1643 | CPS-53 (KpLE1) prophage protein | |||
| 1728 | YjhS protein | |||
| 1729 | R | EcoC1738ORF24580P (100% identity) | Eco10082ORF1729P | |
| 1730 | Uncharacterised protein | |||
| 2757 | DamX protein | |||
| 2758 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco10082DamP |
| 2759 | ribulose-phosphate 3-epimerase | |||
| 2880 | membrane protein | |||
| 2881 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco10082ORF2881P |
| 2882 | DNA-binding protein Fis | |||
| 3226 | Uncharacterised protein | |||
| 3227 | RM | EcoC1738ORF4395P (99% identity) | Eco10082ORF3227P | |
| 3228 | transposase, IS903.B | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1679 | GTP-binding protein YjiA | |||
| 1680 | R | Ssp28760MrrP (100% identity) | Eco10082MrrP | |
| 1681 | type I restriction enzyme EcoKI subunit R | |||
| 1683 | EcoKI restriction-modification system protein | |||
| ??? | R | EcoC1738McrBP (100% identity) | Eco10082McrBP | |
| 1686 | R | EcoC1738McrCP (100% identity) | Eco10082McrCP | |