Clostridium putrefaciens NCTC9836 |
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Putative Clostridium putrefaciens NCTC9836 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 3,121,953 bp
GenBank #: UFWZ00000000 (NZ_UFWZ00000000)
REBASE acronym: Cpu9836
Org_num: 42983
All begin NCTC9836_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 535 | Type I restriction modification DNA specificity | |||
| 536 | M | M.CdiEW9I (84% identity) | GGAGNNNNNAAT | M.Cpu9836I |
| 537 | transposon, resolvase | |||
| 538 | transposase, IS605 OrfB family, central region | |||
| 539 | DNA-damage-inducible protein D | |||
| 540 | S | S.CspTR13ORF3655P (39% identity) | GGAGNNNNNAAT | S2.Cpu9836I |
| 541 | Uncharacterised protein | |||
| 542 | R | CdiRSS13ORF2820P (78% identity) | GGAGNNNNNAAT | Cpu9836IP |
| 543 | zinc metallopeptidase | |||
| 2074 | hydrolase | |||
| 2075 | R | BprPMF1ORF2257P (93% identity) | Cpu9836ORF2078P | |
| 2076 | S | S.Cba1003ORF7605P (47% identity) | S.Cpu9836ORF2078P | |
| 2077 | transposase | |||
| 2078 | M | M.SpaSS17ORF4120P (93% identity) | M.Cpu9836ORF2078P | |
| 2079 | Phd_YefM | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 208 | phage regulatory protein | |||
| 209 | R | Cco2909ORF1725P (61% identity) | Cpu9836ORF210P | |
| 210 | M | M.Csp1485ORF318P (43% identity) | M.Cpu9836ORF210P | |
| 211 | Uncharacterised protein | |||
| 1414 | IS1470, transposase | |||
| 1415 | M | M.Csp275DndBP (81% identity) | M.Cpu9836DndBP | |
| 1416 | sulfurtransferase DndC | |||
| 1415 | DNA sulfur modification protein DndB | |||
| 1416 | M | M.CspS1531DndCP (83% identity) | M.Cpu9836DndCP | |
| 1417 | DNA sulfur modification protein DndD | |||
| 1416 | sulfurtransferase DndC | |||
| 1417 | M | M.Csp275DndDP (76% identity) | M.Cpu9836DndDP | |
| 1418 | DNA sulfur modification protein DndE | |||
| 1417 | DNA sulfur modification protein DndD | |||
| 1418 | M | M.Cta1kDndEP (79% identity) | M.Cpu9836DndEP | |
| 1419 | cysteine desulfurase | |||
| 1418 | DNA sulfur modification protein DndE | |||
| 1419 | M | M.Csp275DndAP (84% identity) | M.Cpu9836DndAP | |
| 1420 | Uncharacterised protein | |||
| 1421 | IS1470, transposase | |||
| ??? | R | Cbocb1DptHP (79% identity) | Cpu9836DptHP | |
| 1424 | DNA phosphorothioation-dependent restriction | |||
| ??? | hypothetical protein | |||
| 1424 | R | Cbocb5DptGP (81% identity) | Cpu9836DptGP | |
| 1425 | transmembrane anchored protein | |||
| 1424 | DNA phosphorothioation-dependent restriction | |||
| 1425 | R | Cbocb1DptFP (81% identity) | Cpu9836DptFP | |
| 1426 | HIT family protein | |||
| 2053 | virulence-like protein | |||
| 2054 | M | M.Cau793ORF20650P (88% identity) | M.Cpu9836ORF2054P | |
| 2055 | Uncharacterised protein | |||
| 2511 | ATP-dependent OLD family endonuclease | |||
| 2512 | RM | CbuTJEORF5900P (63% identity) | Cpu9836ORF2512P | |
| 2513 | Uncharacterised protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 789 | MutT/nudix family protein | |||
| ??? | R | CalB3ORFAP (93% identity) | Cpu9836ORF790P | |
| 791 | Uncharacterised protein | |||