Clostridium cochlearium NCTC13028 |
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Putative Clostridium cochlearium NCTC13028 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 2,598,518 bp
GenBank #: UAWC00000000 (NZ_UAWC00000000)
REBASE acronym: Cco13028
Org_num: 42963
All begin NCTC13028_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2003 | DNA binding domain, excisionase family | |||
| 2004 | M | M.Tcr6911ORF20960P (84% identity) | CTAYNNNNNNTGT | M.Cco13028I |
| 2005 | S | S.WcoXY2ORF12950P (45% identity) | CTAYNNNNNNTGT | S.Cco13028I |
| 2006 | R | Tcr6911ORF20960P (85% identity) | CTAYNNNNNNTGT | Cco13028IP |
| 2007 | Uncharacterised protein | |||
| 1824 | transposase | |||
| 1825 | M | M.BprPMF1ORF2257P (60% identity) | M.Cco13028ORF1825P | |
| 1826 | Phd_YefM | |||
| 576 | multitransmembrane protein | |||
| 577 | R | Cco2909ORF954P (57% identity) | Cco13028ORF580P | |
| 578 | S | S.Clu29923ORF10750P (38% identity) | S.Cco13028ORF580P | |
| 579 | nucleotidyltransferase | |||
| 580 | M | M.Clu29923ORF10750P (85% identity) | M.Cco13028ORF580P | |
| 581 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1029 | Uncharacterised protein | |||
| 1030 | M | M.Cco2909ORF341P (98% identity) | M.Cco13028ORF1030P | |
| 1031 | Uncharacterised protein | |||
| 1931 | chitooligosaccharide deacetylase | |||
| 1932 | M | M.Cco2909II (99% identity) | CAAAAAR | M.Cco13028II |
| 1933 | spermidine synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 213 | Uncharacterised protein | |||
| 214 | M | M.Msu55EORF1026P (38% identity) | M.Cco13028ORF214P | |
| 215 | R | Cac10703ORF18210P (94% identity) | Cco13028ORF214P | |
| 216 | bacterial seryl-tRNA synthetase related | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 107 | Uncharacterised protein | |||
| 108 | R | Cco2909ORF1330P (99% identity) | Cco13028ORF108P | |
| 109 | mutator mutT protein | |||