Clostridioides difficile NCTC13748 |
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Putative Clostridioides difficile NCTC13748 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 4,411,825 bp
GenBank #: UFWA00000000 (NZ_UFWA00000000)
REBASE acronym: Cdi13748
Org_num: 42957
All begin NCTC13748_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3169 | Uncharacterized conserved protein | |||
| 3170 | R | CdiCd8ORF15865P (100% identity) | CANNNNNNNTAAAG | Cdi13748IVP |
| 3171 | Uncharacterised protein | |||
| 3172 | DNA polymerase subunit beta | |||
| 3173 | Uncharacterised protein | |||
| 3174 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.Cdi13748IV |
| 3175 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.Cdi13748IV |
| 3176 | tagatose-bisphosphate aldolase | |||
| 3593 | protein kinase family protein | |||
| 3594 | R | CdiTTIIIP (100% identity) | ATCNNNNNNCTC | Cdi13748IP |
| 3595 | S | S.CdiTTIII (100% identity) | ATCNNNNNNCTC | S.Cdi13748I |
| 3596 | M | M.CdiTTIII (100% identity) | ATCNNNNNNCTC | M.Cdi13748I |
| 3597 | C | C.SanVSI16ORF6495P (100% identity) | C.Cdi13748IP | |
| 3598 | conjugal transfer protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3995 | regulatory protein | |||
| 3996 | M | M.Pdi9689ORF3833P (100% identity) | M.Cdi13748ORF3996P | |
| 3997 | n-acetylmuramoyl-l-alanine amidase | |||
| 4180 | Uncharacterised protein | |||
| 4181 | RM | Cdi40101ORF40300P (100% identity) | RGAAAGR | Cdi13748III |
| 4182 | Uncharacterised protein | |||
| 2910 | phospholipase | |||
| 2911 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi13748II |
| 2912 | transcriptional regulator | |||
| 3264 | two-component response regulator | |||
| 3265 | M | M.Pdi9689DndCP (100% identity) | M.Cdi13748DndCP | |
| 3266 | DNA sulfur modification protein DndD | |||
| 3265 | sulfurtransferase DndC | |||
| 3266 | M | M.Pdi9689DndDP (100% identity) | M.Cdi13748DndDP | |
| 3267 | DNA sulfur modification protein DndE | |||
| 3266 | DNA sulfur modification protein DndD | |||
| 3267 | M | M.Pdi9689DndEP (100% identity) | M.Cdi13748DndEP | |
| 3268 | Uncharacterised protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2202 | sigma-54-dependent transcriptional regulator | |||
| 2203 | R | Pdi6602McrCP (100% identity) | Cdi13748McrCP | |
| 2204 | R | CdiM161McrBP (100% identity) | Cdi13748McrBP | |
| 2205 | cell division protein FtsZ | |||