Chryseobacterium shigense NCTC13533 |
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Putative Chryseobacterium shigense NCTC13533 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,514,839 bp
GenBank #: UFVQ00000000 (NZ_UFVQ00000000)
REBASE acronym: Csh13533
Org_num: 42936
All begin NCTC13533_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 877 | zinc finger/helix-turn-helix protein, | |||
| 878 | M | M.Cca9942ORF3185P (100% identity) | GRNTANNNNNNNTGT | M.Csh13533I |
| 879 | S | S.Cca9942ORF3185P (100% identity) | GRNTANNNNNNNTGT | S.Csh13533I |
| 880 | Uncharacterized conserved protein | |||
| 881 | Uncharacterized conserved protein | |||
| 882 | R | Cca9942ORF3185P (100% identity) | GRNTANNNNNNNTGT | Csh13533IP |
| 883 | Protein of uncharacterised function DUF45 | |||
| 4048 | 5-methylcytosine-specific restriction enzyme B | |||
| 4049 | S | S2.Cca9942ORF17250P (57% identity) | S3.Csh13533ORF4054P | |
| 4050 | Tyrosine recombinase XerC | |||
| 4051 | S | S2.Cca188ORF1160P (100% identity) | S2.Csh13533ORF4054P | |
| 4052 | S | S1.Cca188ORF1160P (82% identity) | S1.Csh13533ORF4054P | |
| 4053 | Uncharacterised protein | |||
| ??? | M | M.Cca188ORF1160P (99% identity) | M.Csh13533ORF4054P | |
| ??? | R | Cca188ORF1160P (99% identity) | Csh13533ORF4054P | |
| 4057 | Uncharacterised protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1603 | Uncharacterised protein | |||
| 1604 | M | M.Cca9942ORF6455P (100% identity) | M.Csh13533ORF1604P | |
| ??? | R | Cca9942ORF6455P (99% identity) | Csh13533ORF1604P | |
| 1607 | Predicted ATP-binding protein involved in | |||
| 1607 | Predicted ATP-binding protein involved in | |||
| ??? | M | M.Cca9942ORF6470P (99% identity) | M.Csh13533ORF1608P | |
| 1610 | Uncharacterized conserved protein | |||
| 1676 | Uncharacterised protein | |||
| ??? | M | M.Cca9942ORF6830P (100% identity) | M.Csh13533ORF1677P | |
| 1679 | PUA domain (predicted RNA-binding domain) | |||
| 1897 | Uncharacterised protein | |||
| ??? | M | M.Cca9942ORF7795P (99% identity) | M.Csh13533ORF1898P | |
| 1900 | Uncharacterised protein | |||
| 1937 | Uncharacterised protein | |||
| 1938 | M | M.Cca9942ORF7970P (100% identity) | M.Csh13533ORF1938P | |
| 1939 | Uncharacterised protein | |||
| 1955 | HNH endonuclease | |||
| 1956 | M | M.Cca9942ORF8040P (98% identity) | M.Csh13533ORF1956P | |
| 1957 | Uncharacterised protein | |||
| 3099 | DNA repair protein RadC | |||
| 3100 | M | M.Cca9942ORF13060P (100% identity) | M.Csh13533ORF3100P | |
| 3101 | DUF based on B. Theta Gene description | |||
| 4225 | Uncharacterised protein | |||
| 4226 | M | M.Cca9942DndCP (100% identity) | M.Csh13533DndCP | |
| 4227 | ATPase involved in DNA repair | |||
| 4226 | PUA domain (predicted RNA-binding domain) | |||
| 4227 | M | M.Cca9942DndDP (100% identity) | M.Csh13533DndDP | |
| 4228 | Type IV secretory pathway, VirB4 components | |||
| 4227 | ATPase involved in DNA repair | |||
| 4228 | M | M.Cca9942DndEP (100% identity) | M.Csh13533DndEP | |
| 4229 | Uncharacterised protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3407 | 70 kDa antigen | |||
| ??? | R | Cca9942ORF14435P (100% identity) | Csh13533ORF3410P | |
| 3410 | M | M.Cca9942ORF14435P (100% identity) | M.Csh13533ORF3410P | |
| 3411 | ATP-independent RNA helicase dbpA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4043 | Uncharacterised protein | |||
| ??? | R | Cca9942McrCP (100% identity) | Csh13533McrCP | |
| ??? | R | Cca9942McrBP (99% identity) | Csh13533McrBP | |
| 4049 | EcoKI restriction-modification system protein | |||