Campylobacter upsaliensis NCTC12264 |
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Putative Campylobacter upsaliensis NCTC12264 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 1,860,642 bp
GenBank #: UFUZ00000000 (NZ_UFUZ00000000)
REBASE acronym: Cup12264
Org_num: 42919
All begin NCTC12264_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 71 | periplasmic protein TonB | |||
| 72 | S | S.Csp25113ORF1607P (45% identity) | S2.Cup12264ORF75P | |
| 73 | S | S.Cup14913ORF1616P (48% identity) | S1.Cup12264ORF75P | |
| 74 | R | CupORF1391P (98% identity) | Cup12264ORF75P | |
| 75 | M | M.CupORF1391P (98% identity) | M.Cup12264ORF75P | |
| 76 | translocation protein TolB | |||
| 231 | polysaccharide deacetylase | |||
| 232 | S | S.Cup197059ORF1382P (28% identity) | S2.Cup12264ORF234P | |
| 233 | S | S.Hwi2049ORF2210P (65% identity) | S1.Cup12264ORF234P | |
| 234 | M | M.Cup736ORF30P (93% identity) | M.Cup12264ORF234P | |
| 235 | amino acid adenylation protein | |||
| 577 | integral membrane protein | |||
| 579 | M | M.CupORF198P (99% identity) | M.Cup12264ORF579P | |
| 580 | Uncharacterised protein | |||
| 581 | death-on-curing family protein | |||
| 582 | S | S.CupORF198P (96% identity) | S.Cup12264ORF579P | |
| ??? | R | CupORF198P (97% identity) | Cup12264ORF579P | |
| 585 | UDP-N-acetylmuramate--L-alanine ligase | |||
| 1352 | tRNA | |||
| 1353 | S | S.CupORF1006P (96% identity) | S.Cup12264ORF1355P | |
| 1354 | Uncharacterised protein | |||
| 1355 | M | M.Hfe13101ORF977P (97% identity) | M.Cup12264ORF1355P | |
| 1356 | R | Hfe13102VP (96% identity) | Cup12264ORF1355P | |
| 1357 | Thioredoxin | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 24 | DNA methylase | |||
| ??? | M | M.CupORF1439P (98% identity) | M.Cup12264ORF25P | |
| ??? | R | CupORF1439P (80% identity) | Cup12264ORF25P | |
| 27 | Uncharacterised protein | |||
| 1884 | Uncharacterised protein | |||
| 1885 | M | M.CupORF72P (100% identity) | M.Cup12264ORF1885P | |
| 1886 | methylase | |||
| 206 | imidazole glycerol-phosphate | |||
| 207 | R | CupORF1770P (97% identity) | Cup12264ORF208P | |
| 208 | M | M.CupORF1769P (98% identity) | M.Cup12264ORF208P | |
| 209 | Imidazole glycerol phosphate synthase | |||
| 306 | acetyl-CoA synthetase | |||
| 307 | M | M.CupORF1665P (98% identity) | M.Cup12264ORF307P | |
| 308 | Uncharacterised protein | |||
| 309 | Uncharacterised protein | |||
| 310 | M | M.CupORF1661P (99% identity) | M.Cup12264ORF310P | |
| 311 | tungstate transport system ATP-binding protein | |||
| 326 | GMP synthase | |||
| 327 | M | M.Hci629ORFSP (94% identity) | M.Cup12264ORF327P | |
| ??? | R | Hbi43879ORF901P (93% identity) | Cup12264ORF327P | |
| 329 | type III restriction/modification enzyme, | |||
| 350 | DNA polymerase I | |||
| 351 | M | M.CupORF23P (97% identity) | M.Cup12264ORF351P | |
| 352 | Uncharacterised protein | |||
| 524 | pyridoxamine 5-phosphate oxidase | |||
| 525 | RM | CupORF142P (73% identity) | Cup12264ORF525P | |
| 526 | Menaquinone via futalosine step 3 | |||
| 620 | Chorismate mutase I / Prephenate dehydratase | |||
| 621 | R | Hfe13102ORF414P (74% identity) | Cup12264ORF624P | |
| 622 | RNA methylase family UPF0020 | |||
| 623 | Uncharacterised protein | |||
| ??? | M | M.Hfe11613II (98% identity) | M.Cup12264ORF624P | |
| 625 | Uncharacterised protein | |||
| 621 | Uncharacterised protein | |||
| 622 | M | M.CupORF235P (98% identity) | M.Cup12264ORF622P | |
| 623 | Uncharacterised protein | |||
| 742 | Uncharacterised protein | |||
| 743 | M | M.Cup11840VII (94% identity) | M.Cup12264ORF743P | |
| 744 | Ppx/GppA family phosphatase | |||
| 775 | Uncharacterised protein | |||
| 776 | RM | Cup736ORF5320P (74% identity) | Cup12264ORF776P | |
| 777 | undecaprenyl diphosphate synthase | |||
| 1077 | Sulfur carrier protein ThiS | |||
| 1078 | RM | Che9613ORF360P (85% identity) | Cup12264ORF1078P | |
| 1079 | succinyl-diaminopimelate desuccinylase | |||
| 1139 | permease | |||
| 1140 | M | M.Hci94105ORF765P (83% identity) | M.Cup12264ORF1140P | |
| 1141 | R | Hci94105ORF765P (94% identity) | Cup12264ORF1140P | |
| 1142 | Protein export cytoplasm protein SecA ATPase RNA | |||
| 1303 | Uncharacterised protein | |||
| ??? | M | M.CupORF945P (93% identity) | M.Cup12264ORF1304P | |
| 1306 | Uncharacterised protein | |||
| 1405 | peptide chain release factor 1 | |||
| ??? | R | CupORF1060P (95% identity) | Cup12264ORF1408P | |
| ??? | M | M1.CupORF1060P (92% identity) | M1.Cup12264ORF1408P | |
| ??? | M | M2.CupORF1060P (95% identity) | M2.Cup12264ORF1408P | |
| 1413 | Methionyl-tRNA formyltransferase | |||
| 1423 | glucose inhibited division protein B | |||
| 1424 | S | Che51209ORF1555P (11% identity) | S.Cup12264ORF1425P | |
| 1425 | RM | Che9613ORF8350P (65% identity) | Cup12264ORF1425P | |
| 1426 | Biotin carboxylase of acetyl-CoA carboxylase | |||
| 1470 | HNH endonuclease | |||
| 1471 | M | M.CupORF1121P (99% identity) | M.Cup12264ORF1471P | |
| 1472 | GTP-binding protein Der | |||
| 1743 | type III restriction/modification enzyme, | |||
| 1744 | R | Csp25113ORF71P (94% identity) | Cup12264ORF1745P | |
| ??? | M | M.Csp25113ORF71P (91% identity) | M.Cup12264ORF1745P | |
| 1746 | radical SAM domain protein | |||
| 1823 | N-acetyl-gamma-glutamyl-phosphate reductase | |||
| 1824 | R | CupORF1489P (39% identity) | Cup12264ORF1827P | |
| 1825 | DNA methylase | |||
| 1826 | Uncharacterised protein | |||
| 1827 | M | M1.CupORF1489P (99% identity) | M.Cup12264ORF1827P | |
| 1828 | D12 class N6 adenine-specific DNA | |||
| 1824 | Uncharacterised protein | |||
| 1825 | M | M.HmuST1ORF4170P (78% identity) | M.Cup12264ORF1825P | |
| 1826 | Uncharacterised protein | |||
| 1827 | D12-class N6-adenine-specific DNA | |||
| 1828 | M | M.CupORF1488P (98% identity) | M.Cup12264ORF1828P | |
| 1829 | R | Cup11541IP (99% identity) | Cup12264ORF1828P | |
| 1830 | Translation initiation factor 3 | |||
| 1835 | DNA topoisomerase I | |||
| 1836 | M | M.Cup6824ORF7945P (99% identity) | M.Cup12264ORF1836P | |
| 1837 | Uncharacterised protein | |||
| 1838 | Glutamate synthase [NADPH] large chain | |||
| 1839 | M | M.CupORF1474P (97% identity) | M.Cup12264ORF1839P | |
| 1840 | R | CupORF1474P (99% identity) | Cup12264ORF1839P | |
| 1841 | Glutamate synthase [NADPH] small chain | |||
| 1844 | Uncharacterised protein | |||
| 1845 | M | M.CupORF1468P (99% identity) | M.Cup12264ORF1845P | |
| 1846 | R | HbiMUIVP (92% identity) | Cup12264ORF1845P | |
| 1847 | Holliday junction resolvase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1164 | Lipid-A-disaccharide synthase; CAzY | |||
| ??? | M | M.Cup8ORFAP (92% identity) | M.Cup12264ORF1165P | |
| ??? | R | CupORF798P (91% identity) | Cup12264ORF1165P | |
| 1168 | Uncharacterised protein | |||
| 1741 | Na+/H+ antiporter family protein | |||
| 1742 | R | Cup197059ORF71P (96% identity) | Cup12264ORF1743P | |
| 1743 | M | M.CupORF1577P (69% identity) | M.Cup12264ORF1743P | |
| 1744 | Uncharacterised protein | |||