Campylobacter upsaliensis NCTC11840 |
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Putative Campylobacter upsaliensis NCTC11840 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 1,652,932 bp
GenBank #: UFUV00000000 (NZ_UFUV00000000)
REBASE acronym: Cup11840
Org_num: 42918
All begin NCTC11840_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 324 | glucose inhibited division protein B | |||
| ??? | R | Cup6824ORF1355P (97% identity) | Cup11840ORF327P | |
| 327 | M | M.Cup6824ORF1355P (99% identity) | M.Cup11840ORF327P | |
| 328 | Uncharacterised protein | |||
| 329 | addiction module toxin, Txe/YoeB family | |||
| 330 | S | S.Cup6824ORF1355P (75% identity) | S.Cup11840ORF327P | |
| 331 | tRNA | |||
| 1087 | UDP-N-acetylmuramate--L-alanine ligase | |||
| 1088 | R | Cup3940ORF1056P (97% identity) | ATTNNNNNNNTCNNC | Cup11840IP |
| 1089 | S | S.Cup3940ORF1056P (84% identity) | ATTNNNNNNNTCNNC | S.Cup11840I |
| 1090 | death-on-curing family protein | |||
| 1091 | Uncharacterised protein | |||
| 1092 | M | M.Cup3940ORF1056P (98% identity) | ATTNNNNNNNTCNNC | M.Cup11840I |
| 1094 | integral membrane protein | |||
| 1415 | Uncharacterised protein | |||
| 1416 | M | M.Hwi435ORF2180P (99% identity) | CRTANNNNNNNTTTA | M.Cup11840II |
| 1417 | S | S1.Cup736ORF30P (61% identity) | CRTANNNNNNNTTTA | S.Cup11840II |
| 1418 | DGQHR domain | |||
| 1615 | translocation protein TolB | |||
| ??? | M | M.Cup6824ORF7620P (99% identity) | M.Cup11840ORF1616P | |
| 1618 | R | Cup6824ORF7620P (97% identity) | Cup11840ORF1616P | |
| 1619 | S | S.Cup11541ORF1651P (55% identity) | S1.Cup11840ORF1616P | |
| 1620 | S | S2.Cup12264ORF75P (87% identity) | S2.Cup11840ORF1616P | |
| 1621 | periplasmic protein TonB | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 267 | GTP-binding protein Der | |||
| 268 | M | M.Cup12264ORF1471P (90% identity) | CCGG | M.Cup11840IV |
| 269 | HNH endonuclease | |||
| 391 | Thioredoxin | |||
| 392 | R | Cup197059ORF387P (100% identity) | Cup11840ORF393P | |
| 393 | M | M.Cup197059ORF387P (100% identity) | M.Cup11840ORF393P | |
| 394 | Crp/Fnr family transcriptional regulator | |||
| 627 | succinyl-diaminopimelate desuccinylase | |||
| ??? | RM | Cup14913ORF596P (98% identity) | Cup11840ORF628P | |
| 630 | Sulfur carrier protein ThiS | |||
| 774 | membrane protein | |||
| ??? | M | M.Che51209ORF832P (72% identity) | M.Cup11840ORF775P | |
| 777 | Uncharacterized conserved protein | |||
| 792 | Uncharacterised protein | |||
| 793 | M | M.Cup197059ORF779P (96% identity) | GATC | M.Cup11840VII |
| 794 | Ppx/GppA family phosphatase | |||
| 826 | Uncharacterised protein | |||
| 827 | RM | Cup6824ORF3545P (99% identity) | Cup11840ORF827P | |
| 828 | S | Csp25113ORF876P (32% identity) | S.Cup11840ORF827P | |
| 829 | undecaprenyl diphosphate synthase | |||
| 1052 | Uncharacterised protein | |||
| ??? | M | M.Cup6824ORF4825P (99% identity) | ACNGT | M.Cup11840VI |
| 1054 | R | Cup736ORF6595P (97% identity) | ACNGT | Cup11840VIP |
| 1055 | Chorismate mutase I / Prephenate dehydratase | |||
| 1156 | phage virion morphogenesis protein | |||
| ??? | M | M.Cup197059ORF1141P (98% identity) | M.Cup11840ORF1157P | |
| 1159 | Uncharacterised protein | |||
| 1162 | phage repressor protein | |||
| 1163 | R | Cjes32806ORF9030P (93% identity) | Cup11840ORF1164P | |
| 1164 | M | M.Cup197059ORF1147P (97% identity) | M.Cup11840ORF1164P | |
| 1165 | Adenine specific DNA methylase Mod | |||
| 1164 | modification methylase | |||
| 1165 | M | M1.Cup197059ORF1148P (99% identity) | M.Cup11840ORF1165P | |
| 1166 | Uncharacterised protein | |||
| 1165 | Adenine specific DNA methylase Mod | |||
| 1166 | R | Cup197059ORF1150P (100% identity) | Cup11840ORF1166P | |
| 1167 | type II restriction-modification enzyme | |||
| 1166 | Uncharacterised protein | |||
| 1167 | M | M.Cup197059ORF1150P (99% identity) | CTRYAG | M.Cup11840IX |
| 1168 | Uncharacterised protein | |||
| 1167 | type II restriction-modification enzyme | |||
| 1168 | M | M2.Cup197059ORF1148P (100% identity) | M.Cup11840ORF1168P | |
| 1169 | GMP synthase | |||
| 1184 | tungstate transport system ATP-binding protein | |||
| 1185 | modification methylase StsI | |||
| 1184 | tungstate transport system ATP-binding protein | |||
| 1185 | M | M.Cup197059ORF1168P (100% identity) | M.Cup11840ORF1185P | |
| 1186 | Uncharacterised protein | |||
| 1314 | 2-amino-4-hydroxy-6- | |||
| 1315 | R | Cup6824ORF5895P (96% identity) | Cup11840ORF1316P | |
| ??? | M | M.Cup197059ORF1283P (96% identity) | M.Cup11840ORF1316P | |
| 1318 | DNA polymerase I | |||
| 1345 | Uncharacterised protein | |||
| 1346 | M | M.Cup197059ORF1313P (99% identity) | M.Cup11840ORF1346P | |
| 1347 | acetyl-CoA synthetase | |||
| 1674 | D12-class N6-adenine-specific DNA | |||
| 1675 | M | M.Cup6824ORF7900P (100% identity) | RAATTY | M.Cup11840III |
| 1676 | Uncharacterised protein | |||
| 1686 | Glutamate synthase [NADPH] large chain | |||
| 1687 | M | M.Cup197059ORF1654P (99% identity) | M.Cup11840ORF1687P | |
| 1688 | Uncharacterised protein | |||
| ??? | R | Cup6824ORF7960P (74% identity) | Cup11840ORF1687P | |
| 1690 | Glutamate synthase [NADPH] small chain | |||
| 1692 | ribosomal pseudouridine synthase | |||
| 1693 | M | M.Che9613ORF6920P (83% identity) | GCATC | M.Cup11840X |
| 1694 | Uncharacterised protein | |||
| 1695 | Modification methylase FokI | |||
| 1696 | M | M.Cup12264ORF1825P (95% identity) | CGCG | M.Cup11840V |
| 1697 | Uncharacterised protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 72 | Na+/H+ antiporter family protein | |||
| 73 | R | HciT36ORF11P (98% identity) | Cup11840ORF74P | |
| 74 | M | M.HbiAAQJHORF11060P (98% identity) | M.Cup11840ORF74P | |
| 75 | radical SAM domain protein | |||
| 520 | Uncharacterised protein | |||
| ??? | R | Cup736ORF4090P (99% identity) | Cup11840ORF522P | |
| 522 | M | M.Cup6ORFAP (97% identity) | M.Cup11840ORF522P | |
| 523 | Lipid-A-disaccharide synthase; CAzY | |||