Campylobacter upsaliensis NCTC11540 |
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Putative Campylobacter upsaliensis NCTC11540 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 1,660,668 bp
GenBank #: UFVA00000000 (NZ_UFVA00000000)
REBASE acronym: Cup11540
Org_num: 42917
All begin NCTC11540_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 298 | glucose inhibited division protein B | |||
| 299 | R | Cup14913ORF294P (100% identity) | TAAYNNNNNNNTAYC | Cup11540IP |
| 300 | M | M.Cup14913ORF294P (100% identity) | TAAYNNNNNNNTAYC | M.Cup11540I |
| 301 | Uncharacterised protein | |||
| 302 | addiction module toxin, Txe/YoeB family | |||
| 303 | S | S.Cup14913ORF294P (100% identity) | TAAYNNNNNNNTAYC | S.Cup11540I |
| 304 | tRNA | |||
| 1080 | UDP-N-acetylmuramate--L-alanine ligase | |||
| 1081 | R | Cup14913ORF1062P (100% identity) | Cup11540ORF1085P | |
| 1082 | Protein of uncharacterised function (DUF3644) | |||
| 1083 | S | S.Cup14913ORF1062P (100% identity) | S.Cup11540ORF1085P | |
| 1084 | Uncharacterised protein | |||
| 1085 | M | M.Cup14913ORF1062P (100% identity) | M.Cup11540ORF1085P | |
| 1087 | integral membrane protein | |||
| 1644 | type I restriction-modification system, M | |||
| ??? | M | M.Cup14913ORF1616P (87% identity) | M.Cup11540ORF1645P | |
| 1646 | R | Cup14913ORF1616P (100% identity) | Cup11540ORF1645P | |
| 1647 | S | S.Cup14913ORF1616P (100% identity) | S.Cup11540ORF1645P | |
| 1648 | periplasmic protein TonB | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 215 | D-glycero-D-manno-heptose 1-phosphate | |||
| 216 | M | M.Cup14913ORF209P (93% identity) | M.Cup11540ORF216P | |
| 217 | Uncharacterised protein | |||
| 610 | succinyl-diaminopimelate desuccinylase | |||
| ??? | RM | Cup14913ORF596P (100% identity) | Cup11540ORF611P | |
| 613 | Sulfur carrier protein ThiS | |||
| 754 | membrane protein | |||
| ??? | M | M.Cup14913ORF735P (69% identity) | M.Cup11540ORF755P | |
| 757 | Uncharacterized conserved protein | |||
| 772 | Uncharacterised protein | |||
| 773 | M | M.Cup14913ORF753P (100% identity) | GATC | M.Cup11540III |
| 774 | Ppx/GppA family phosphatase | |||
| 804 | Uncharacterised protein | |||
| 805 | RM | Cup14913ORF785P (100% identity) | Cup11540ORF805P | |
| 806 | S | S.Cup14913ORF785P (100% identity) | S.Cup11540ORF805P | |
| 807 | Undecaprenyl diphosphate synthase | |||
| 1044 | Uncharacterised protein | |||
| ??? | M | M.Cup14913ORF1024P (100% identity) | M.Cup11540ORF1045P | |
| 1047 | Chorismate mutase I / Prephenate dehydratase | |||
| 1275 | 2-amino-4-hydroxy-6- | |||
| 1276 | R | Cup14913ORF1254P (100% identity) | Cup11540ORF1278P | |
| 1277 | Uncharacterised protein | |||
| 1278 | M | M.Cup14913ORF1254P (100% identity) | M.Cup11540ORF1278P | |
| 1279 | DNA polymerase I | |||
| 1317 | tungstate transport system ATP-binding protein | |||
| 1318 | M | M.Cup736ORF7870P (100% identity) | M.Cup11540ORF1318P | |
| 1319 | Uncharacterised protein | |||
| 1319 | Uncharacterised protein | |||
| 1320 | M | M.Cup14913ORF1296P (100% identity) | M.Cup11540ORF1320P | |
| 1321 | acetyl-CoA synthetase | |||
| 1483 | Iron-sulfur cluster-binding protein | |||
| 1484 | M | M1.Cup14913ORF1457P (100% identity) | GGTGA | M1.Cup11540IVP |
| 1485 | M | M2.Cup14913ORF1457P (100% identity) | GGTGA | M2.Cup11540IV |
| 1486 | R | Cup14913ORF1457P (100% identity) | GGTGA | Cup11540IVP |
| 1487 | selenocysteine synthase | |||
| 1698 | N-acetyl-gamma-glutamyl-phosphate reductase | |||
| 1699 | R | Cup14913ORF1670P (100% identity) | Cup11540ORF1700P | |
| ??? | M | M1.Cup14913ORF1670P (100% identity) | M1.Cup11540ORF1700P | |
| 1702 | M | M2.Cup14913ORF1670P (100% identity) | M2.Cup11540ORF1700P | |
| 1703 | D12 class N6 adenine-specific DNA | |||
| 1702 | D12-class N6-adenine-specific DNA | |||
| 1703 | M | M.Cup14913ORF1672P (100% identity) | RAATTY | M.Cup11540II |
| 1704 | Uncharacterised protein | |||
| 1715 | Glutamate synthase [NADPH] large chain | |||
| 1716 | M | M.Cup14913ORF1685P (100% identity) | M.Cup11540ORF1716P | |
| 1717 | R | Cup14913ORF1685P (100% identity) | Cup11540ORF1716P | |
| 1718 | Glutamate synthase [NADPH] small chain | |||
| 1720 | RNA pseudouridine synthase family protein | |||
| ??? | M | M1.Cup14913ORF1690P (100% identity) | M1.Cup11540ORF1721P | |
| 1723 | M | M2.Cup14913ORF1690P (100% identity) | M2.Cup11540ORF1721P | |
| ??? | R | Cup14913ORF1690P (100% identity) | Cup11540ORF1721P | |
| 1726 | Holliday junction resolvase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 76 | Na+/H+ antiporter family protein | |||
| 77 | R | Cup14913ORF75P (100% identity) | Cup11540ORF78P | |
| ??? | M | M.Cup14913ORF75P (99% identity) | M.Cup11540ORF78P | |
| 80 | radical SAM domain protein | |||
| 520 | Uncharacterised protein | |||
| ??? | R | Cup14913ORF509P (99% identity) | Cup11540ORF522P | |
| ??? | M | M.Cup14913ORF509P (99% identity) | M.Cup11540ORF522P | |
| 524 | Lipid-A-disaccharide synthase; CAzY | |||
| 1333 | Fumarate hydratase class II | |||
| 1334 | R | Cup14913ORF1311P (100% identity) | Cup11540ORF1335P | |
| 1335 | M | M.Cup14913ORF1311P (100% identity) | M.Cup11540ORF1335P | |
| 1337 | periplasmic protein | |||