Burkholderia oklahomensis NCTC13388 |
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Putative Burkholderia oklahomensis NCTC13388 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 7,174,317 bp
GenBank #: UFUH00000000 (NZ_UFUH00000000)
REBASE acronym: Bok13388
Org_num: 42879
All begin NCTC13388_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1686 | Site-specific recombinase XerD | |||
| 1687 | R | BokCIP (93% identity) | CCACNNNNWTCA | Bok13388IIIP |
| 1688 | S | S.BokCI (100% identity) | CCACNNNNWTCA | S.Bok13388III |
| 1689 | M | M.BokCI (100% identity) | CCACNNNNWTCA | M.Bok13388III |
| 1690 | Uncharacterised protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 673 | Uncharacterised protein | |||
| 674 | M | M.BokCORFIP (41% identity) | M.Bok13388ORF674P | |
| 676 | Dehydrosqualene synthase | |||
| 5039 | Tryptophan synthase alpha chain | |||
| 5040 | M | M.BokEORFHP (87% identity) | GTWWAC | M.Bok13388II |
| 5041 | Tryptophan synthase beta chain | |||
| 2069 | Transposase and inactivated derivatives | |||
| ??? | V | V.BokCORFAP (100% identity) | V.Bok13388ORF2071P | |
| 2070 | R | BokCORFAP (100% identity) | Bok13388ORF2071P | |
| 2071 | M | M.BokCORFAP (100% identity) | M.Bok13388ORF2071P | |
| 2072 | Uncharacterised protein | |||
| 2304 | Phage P2 baseplate assembly protein gpV | |||
| 2305 | M | M.BokBDUORF3339P (93% identity) | M.Bok13388ORF2305P | |
| 2306 | Uncharacterised protein | |||
| 3522 | Uncharacterized copper-binding protein | |||
| ??? | M | M.BokCORFCP (100% identity) | M.Bok13388ORF3523P | |
| 3525 | Uncharacterised protein | |||
| 3634 | Uncharacterised protein | |||
| ??? | M | M.BokCORFGP (100% identity) | M.Bok13388ORF3636P | |
| 3637 | PUA domain (predicted RNA-binding domain) | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2209 | Outer membrane porin protein BP0840 precursor | |||
| 2210 | M | M.BokCORFBP (98% identity) | CACAG | M.Bok13388I |
| 2211 | R | BokCORFBP (100% identity) | CACAG | Bok13388IP |
| 2212 | Outer membrane porin protein BP0840 precursor | |||