Avibacterium paragallinarum NCTC11296 |
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Putative Avibacterium paragallinarum NCTC11296 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 2,860,434 bp
GenBank #: UGHK00000000 (NZ_UGHK00000000)
REBASE acronym: Apa11296
Org_num: 39227
All begin NCTC11296_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 660 | diadenosine tetraphosphatase | |||
| 662 | R | ApasMORFBP (100% identity) | Apa11296ORF668P | |
| 663 | transcriptional regulator | |||
| 664 | addiction module killer protein | |||
| 665 | Uncharacterised protein | |||
| 666 | Uncharacterised protein | |||
| 667 | S | S.ApasMORFBP (100% identity) | S.Apa11296ORF668P | |
| 668 | M | M.ApasMORFBP (82% identity) | M.Apa11296ORF668P | |
| 669 | pyruvate formate lyase-activating enzyme 1 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15 | Uncharacterised protein | |||
| 16 | M | M.Apa4211ORF520P (100% identity) | M.Apa11296ORF16P | |
| 17 | IS1016 transposase | |||
| 924 | Uncharacterised protein | |||
| 925 | R | Apa4211ORFAP (100% identity) | Apa11296ORF925P | |
| ??? | M | M1.Apa4211ORFAP (100% identity) | M.Apa11296ORF925P | |
| 926 | ISNme5, family IS110 | |||
| 36 | bacteriophage replication gene A | |||
| 37 | M | M.Apa4211ORF320P (100% identity) | GATC | M.Apa11296ORF37P |
| 38 | N-6 DNA methylase | |||
| 945 | Uncharacterised protein | |||
| 946 | M | M2.Apa11296ORF177P (100% identity) | M.Apa11296ORF177P | |
| 947 | C5 methylase | |||
| 68 | C5 methylase | |||
| 69 | M | M.Apa11296ORF68P (100% identity) | M2.Apa11296ORF68P | |
| 70 | Uncharacterised protein | |||
| 106 | Uncharacterised protein | |||
| 107 | M | M2.Apa11296ORF68P (100% identity) | M1.Apa11296ORF107P | |
| 108 | C5 methylase | |||
| 1016 | Uncharacterised protein | |||
| 1017 | M | M.Apa4211ORF190P (99% identity) | M.Apa11296ORF1017P | |
| 1018 | Uncharacterised protein | |||
| 3089 | Uncharacterized protein conserved in bacteria | |||
| ??? | M | M.Apa4211ORF770P (97% identity) | M.Apa11296ORF3090P | |
| 3091 | R | ApaESV135ORF2500P (100% identity) | Apa11296ORF3090P | |
| 3092 | valyl-tRNA ligase | |||
| 3103 | Uncharacterized conserved protein | |||
| ??? | M | M.Apa4211ORF1660P (91% identity) | M.Apa11296ORF3104P | |
| 3106 | Uncharacterised protein | |||
| 1054 | protein involved in chromosome partitioning | |||
| 1055 | M | M.ApasMORFEP (100% identity) | M.Apa11296ORF1055P | |
| 1056 | R | Apa10926ORF788P (100% identity) | Apa11296ORF1055P | |
| 1057 | condesin subunit F | |||
| 177 | C5 methylase | |||
| 178 | M | M.Apa11296ORF177P (100% identity) | M2.Apa11296ORF177P | |
| 179 | Uncharacterised protein | |||
| 1214 | recombination protein NinB | |||
| 1215 | M | M.Apa4211ORF2010P (100% identity) | M.Apa11296ORF1215P | |
| 1216 | Uncharacterised protein | |||
| 699 | ISHin1, family IS3 | |||
| 700 | RM | Apa4211ORF480CP (100% identity) | Apa11296ORF700P | |
| 701 | M | Apa4211ORF480BP (100% identity) | M2.Apa11296ORF700P | |
| 702 | M | Apa4211ORF480AP (100% identity) | M1.Apa11296ORF700P | |
| 703 | Uncharacterised protein | |||
| 715 | transposase | |||
| 716 | RM | Apa4211ORF340P (100% identity) | Apa11296ORF716P | |
| 717 | ribosomal protein S12 methylthiotransferase | |||
| 1750 | type III restriction system methylase | |||
| ??? | M | M.Apa4211ORF1660P (99% identity) | M.Apa11296ORF1751P | |
| 1753 | Modulator of FtsH protease HflK | |||
| 1995 | C5 methylase | |||
| 1996 | M | M2.Apa11296ORF68P (100% identity) | M.Apa11296ORF68P | |
| 1997 | Uncharacterised protein | |||
| 2406 | Uncharacterised protein | |||
| 2407 | M | M.Apa4211ORF520P (99% identity) | M.Apa11296ORF2407P | |
| 2408 | Uncharacterised protein | |||
| 2775 | restriction enzyme subunit beta | |||
| 2776 | S | S1.ApasMORFIP (98% identity) | S.Apa11296ORF2776P | |
| 2777 | restriction enzyme subunit alpha/N-6 DNA | |||
| 2776 | restriction enzyme subunit beta/N-6 DNA | |||
| 2777 | RM | ApasMORFIP (100% identity) | Apa11296ORF2777P | |
| 2778 | bifunctional glutamate--cysteine | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 522 | M20C family Xaa-His dipeptidase | |||
| 523 | R | Apa4211ORF310P (100% identity) | Apa11296ORF524P | |
| 524 | M | M.Apa4211ORF310P (100% identity) | M.Apa11296ORF524P | |
| 525 | Predicted acetyltransferase | |||
| 2126 | DNA methylase N-4/N-6 domain-containing protein | |||
| 2127 | M | M2.Apa221ORFIP (97% identity) | CACAG | M.Apa11296I |
| 2128 | R | Apa4211ORF140P (100% identity) | CACAG | Apa11296IP |
| 2131 | phage protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2570 | Protein of uncharacterised function (DUF721) | |||
| ??? | M | M.Apa10926ORF2647P (100% identity) | GATC | M.Apa11296ORF2571P |
| 2572 | 3-dehydroquinate synthase | |||