Avibacterium gallinarum NCTC11188 |
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Putative Avibacterium gallinarum NCTC11188 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 2,454,192 bp
GenBank #: UGSQ00000000 (NZ_UGSQ00000000)
REBASE acronym: Aga11188
Org_num: 39225
All begin NCTC11188_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | Acr30MAORFAP (63% identity) | AAGNNNNNNTCG | Aga11188IIP |
| 4 | DNA-damage-inducible protein D | |||
| 5 | DNA-damage-inducible protein D | |||
| 6 | GIY-YIG catalytic domain | |||
| 7 | Virulence protein | |||
| 8 | S | S.Aga11188I (68% identity) | AAGNNNNNNTCG | S.Aga11188II |
| 9 | M | M.Aga11188III (100% identity) | AAGNNNNNNTCG | M.Aga11188II |
| 10 | Uncharacterised protein | |||
| 2374 | Uncharacterised protein | |||
| ??? | R | Aga11188IP (87% identity) | ACCNNNNNCTT | Aga11188IIIP |
| 2377 | DNA-damage-inducible protein D | |||
| 2378 | Uncharacterised protein | |||
| 2379 | GIY-YIG catalytic domain | |||
| 2380 | Virulence protein | |||
| 2381 | Virulence protein | |||
| 2382 | S | S.Aga11188I (67% identity) | ACCNNNNNCTT | S.Aga11188III |
| 2383 | M | M.Aga11188II (100% identity) | ACCNNNNNCTT | M.Aga11188III |
| 2384 | EcoKI restriction-modification system protein | |||
| 2368 | Uncharacterised protein | |||
| 2369 | M | M.Aga11188III (100% identity) | AAGNNNNNNTCG | M.Aga11188II |
| 2370 | S | S.Aga11188I (68% identity) | AAGNNNNNNTCG | S.Aga11188II |
| 2371 | R | Acr30MAORFAP (63% identity) | AAGNNNNNNTCG | Aga11188IIP |
| 2372 | GIY-YIG catalytic domain | |||
| 669 | Uncharacterised protein | |||
| 670 | S | S.Pma10699I (90% identity) | GAAGNNNNNTG | S.Aga11188IV |
| 671 | M | M.Pma10699I (97% identity) | GAAGNNNNNTG | M.Aga11188IV |
| 672 | Uncharacterised protein | |||
| 1003 | Uncharacterised protein | |||
| 1004 | M | M.ApaAP2ORF3075P (69% identity) | TAAGNNNNNTAG | M.Aga11188V |
| 1005 | S | S.GanDFS02ORF1025P (51% identity) | TAAGNNNNNTAG | S.Aga11188V |
| 1006 | FRG domain | |||
| 1007 | Uncharacterised protein | |||
| 1008 | Uncharacterised protein | |||
| 1009 | R | HgaORFAP (98% identity) | TAAGNNNNNTAG | Aga11188VP |
| 1010 | Uncharacterised protein | |||
| 1317 | fatty acid metabolism regulator protein | |||
| 1318 | M | M.Orh174bORF9245P (93% identity) | M.Aga11188ORF1318P | |
| 1319 | Virulence protein | |||
| 1320 | S | S.WviORF80P (19% identity) | S1.Aga11188ORF1318P | |
| 1321 | S | S.CspLHA6ORF10475P (29% identity) | S2.Aga11188ORF1318P | |
| 1322 | Uncharacterized protein conserved in bacteria | |||
| 1323 | Uncharacterized protein conserved in bacteria | |||
| 1324 | R | Nbr17716ORF4045P (69% identity) | Aga11188ORF1318P | |
| 1325 | aminotransferase | |||
| 1666 | Uncharacterised protein | |||
| 1667 | R | Gan200ORF11435P (97% identity) | AAGNNNNNCTT | Aga11188IP |
| 1668 | DNA-damage-inducible protein D | |||
| 1669 | GIY-YIG catalytic domain | |||
| 1670 | Virulence protein | |||
| 1671 | S | S1.Pma10699ORF1121P (63% identity) | AAGNNNNNCTT | S.Aga11188I |
| 1672 | M | M.Aga11188III (100% identity) | AAGNNNNNCTT | M.Aga11188I |
| 1673 | Integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1372 | arginine transport ATP-binding protein ArtP | |||
| 1373 | M | M.RlaORF1538P (83% identity) | M.Aga11188ORF1373P | |
| 1374 | Uncharacterised protein | |||
| 1374 | Uncharacterised protein | |||
| 1375 | R | Mho8958ORF1935P (46% identity) | Aga11188ORF1376P | |
| ??? | M | M2.Dsa2ORF12195P (34% identity) | M.Aga11188ORF1376P | |
| 1377 | permease PerM | |||
| 1599 | Probable hemoglobin and | |||
| 1600 | RM | ApaESV135ORF8505P (89% identity) | Aga11188ORF1600P | |
| 1601 | D-3-phosphoglycerate dehydrogenase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2225 | 3-dehydroquinate synthase | |||
| ??? | M | M.Aav11297II (97% identity) | GATC | M.Aga11188VI |
| 2227 | Protein of uncharacterised function (DUF721) | |||