Escherichia coli 2018-10-2CC |
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Putative Escherichia coli 2018-10-2CC RM systems
Ref: Yamamoto,Y. et al. mSphere (2020) In press
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,697,529 bp | AP027899 |
| plasmid p2018-10-2CC_1: | 129,685 bp | AP027900 |
REBASE acronym: Eco102CC
Org_num: 72612
All begin VEE75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 37480 | restriction methylase | |||
| 37490 | M | M.SsoSE61ORF6540P (20% identity) | GACNNNNNNRTAAY | M.Eco102CCORF37490AP |
| 37500 | transposase | |||
| 37510 | transposase | |||
| 37520 | M | M.Ysp228I (7% identity) | GACNNNNNNRTAAY | M.Eco102CCORF37490BP |
| 37530 | M | M.SsoSE61ORF6540P (59% identity) | GACNNNNNNRTAAY | M.Eco102CCORF37490CP |
| 37540 | S | S.SsoSE61ORF6540P (100% identity) | GACNNNNNNRTAAY | S.Eco102CCORF37490P |
| 37550 | R | SflFF22ORF2075P (100% identity) | GACNNNNNNRTAAY | Eco102CCORF37490P |
| 37560 | alcohol dehydrogenase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3390 | cell division protein DamX | |||
| 3400 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco102CCDamP |
| 3410 | ribulose-phosphate 3-epimerase | |||
| 4410 | acrEF/envCD operon transcriptional regulator | |||
| 4420 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco102CCORF4420P |
| 4430 | DNA-binding protein Fis | |||
| 11170 | 90 aa hypothetical protein | |||
| 11180 | R | R1.Eco11ORF8580P (100% identity) | R1.Eco102CCORF11200P | |
| 11190 | R | Eco14759ORF6115P (100% identity) | R2.Eco102CCORF11200P | |
| 11200 | M | M.EcoST70ORF6140P (100% identity) | M.Eco102CCORF11200P | |
| 11210 | integrase | |||
| 28780 | 343 aa hypothetical protein | |||
| ??? | M | M.EcoMSI001ORF17885P (100% identity) | M.Eco102CCORF28790P | |
| 28800 | replication protein P | |||
| plasmid p2018-10-2CC_1 | ||||
| 44200 | 73 aa hypothetical protein | |||
| 44210 | M | M.Eco746ORF25930P (100% identity) | M.Eco102CCORF44210P | |
| 44220 | 308 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 580 | DNA damage-inducible protein D | |||
| 590 | R | EcoY2019ORF14655P (100% identity) | Eco102CCORF600P | |
| 600 | M | M.EcoY2019ORF14655P (100% identity) | M.Eco102CCORF600P | |
| 610 | 701 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 600 | DNA methylase N-4 | |||
| 610 | R | Vch14334GmrSDP (98% identity) | Eco102CCGmrSDP | |
| 620 | helicase SNF2 | |||